Tag: Homogeneous catalysis

  • Lehmann, J. W., Blair, D. J. & Burke, M. D. Towards the generalized iterative synthesis of small molecules. Nat. Rev. Chem. 2, 0115 (2018).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Salley, D., Manzano, J. S., Kitson, P. J. & Cronin, L. Robotic modules for the programmable chemputation of molecules and materials. ACS Cent. Sci. 9, 1525–1537 (2023).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Abolhasani, M. & Kumacheva, E. The rise of self-driving labs in chemical and materials sciences. Nat. Synth. 2, 483–492 (2023).

    Article 
    ADS 

    Google Scholar
     

  • Santanilla, A. B. et al. Nanomole-scale high-throughput chemistry for the synthesis of complex molecules. Science 347, 49–53 (2014).

    Article 

    Google Scholar
     

  • Mahjour, B. et al. Rapid planning and analysis of high-throughput experiment arrays for reaction discovery. Nat. Commun. 14, 3924 (2023).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Osipyan, A. et al. Automated, accelerated nanoscale synthesis of iminopyrrolidines. Angew. Chem. Int. Ed. 59, 12423–12427 (2020).

    Article 
    CAS 

    Google Scholar
     

  • Hu, H. et al. Accelerating pharmaceutical process development with an acoustic droplet ejection-multiple reaction monitoring-mass spectrometry workflow. Anal. Chem. 96, 1138–1146 (2024).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • DiRico, K. J. et al. Ultra-high-throughput acoustic droplet ejection-open port interface-mass spectrometry for parallel medicinal chemistry. ACS Med. Chem. Lett. 11, 1101–1110 (2020).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Blair, D. J. et al. Automated iterative Csp3–C bond formation. Nature 604, 92–97 (2022).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Kitson, P. J. et al. Digitization of multistep organic synthesis in reactionware for on-demand pharmaceuticals. Science 359, 314–319 (2018).

    Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar
     

  • Wang, W. et al. Rapid automated iterative small-molecule synthesis. Nat. Synth. 3, 1031–1038 (2024).

    Article 

    Google Scholar
     

  • Bonde, M. T. et al. Direct mutagenesis of thousands of genomic targets using microarray-derived oligonucleotides. ACS Synth. Biol. 4, 17–22 (2015).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Chang, J. et al. Efficient closed-loop maximization of carbon nanotube growth rate using Bayesian optimization. Sci. Rep. 10, 9040 (2020).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Thompson, A. et al. Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal. Chem. 75, 1895–1904 (2003).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Rinehart, N. I. et al. A machine-learning tool to predict substrate-adaptive conditions for Pd-catalyzed C-N couplings. Science 381, 965–972 (2023).

    Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar
     

  • Grainger, R. & Whibley, S. A perspective on the analytical challenges encountered in high-throughput experimentation. Org. Process Res. Rev. 25, 354–364 (2021).

    CAS 

    Google Scholar
     

  • Lin, S. et al. Mapping the dark space of chemical reactions with extended nanomole synthesis and MALDI-TOF MS. Science 361, eaar6236 (2018).

    Article 
    PubMed 

    Google Scholar
     

  • King-Smith, E. et al. Probing the chemical ‘reactome’ with high-throughput experimentation data. Nat. Chem. 16, 633–643 (2024).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Angello, N. H. et al. Closed-loop optimization of general reaction condtions for heteroaryl Suzuki-Miyaura coupling. Science 378, 399–405 (2022).

    Article 
    ADS 
    MathSciNet 
    CAS 
    PubMed 

    Google Scholar
     

  • Wang, J. Y. et al. Identifying general reaction conditions by bandit optimization. Nature 626, 1025–1033 (2024).

    Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar
     

  • Yu, Q. et al. Sample multiplexing-based targeted pathway proteomics with real-time analytics reveals the impact of genetic variation on protein expression. Nat. Commun. 14, 555 (2023).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Schoen, A. E. et al. A hybrid BEQQ mass spectrometer. Int. J. Mass Spectrom. Ion Process. 65, 125–140 (1985).

    Article 
    ADS 
    CAS 

    Google Scholar
     

  • Nishiguchi, G. et al. Evaluating and evolving a screening library in academia: the St Jude Approach. Drug Discov. Today 26, 1060–1069 (2021).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Aisporna, A. et al. Neutral loss mass spectral data enhances molecular similarity analysis in METLIN. J. Am. Soc. Mass. Spectrom. 33, 530–534 (2022).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Ma, Y., Kind, T., Yang, D., Leon, C. & Fiehn, O. MS2Analyzer: a software for small molecule substructure annotations from accurate tandem mass spectra. Anal. Chem. 86, 10724–10731 (2014).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Sherwood, C. A. et al. Rapid optimization of MRM-MS instrument parameters by subtle alteration of precursor and product m/z targets. J. Proteome Res. 8, 3746–3751 (2009).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Dubey, R., Hull, D. W., Lai, S., Ming-Hui, C. & Grant, D. F. Correction of precursor and product ion relative abundances in order to standardize CID spectra and improve Ecom50 accuracy for non-targeted metabolomics. Metabolomics 11, 753–763 (2015).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Verardo, G. & Gorassini, A. Characterization of N-Boc/Fmoc/Z-N′-formyl-gem-diaminoalkyl derivatives using electrospray ionization multi-stage mass spectrometry. J. Mass Spectrom. 48, 1136–1149 (2013).

    Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar
     

  • Ruzicka, J., Weisbecker, C. & Attygalle, A. B. Collision-induced dissociation mass spectra of positive ions derived from tetrahydropyranyl (THP) ethers of primary alcohols. J. Mass Spectrom. 46, 12–23 (2011).

    Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar
     

  • Llano-Sotelo, B. et al. Binding and action of CEM-101, a new fluoroketolide antibiotic that inhibits protein synthesis. Antimicrob. Agents Chemother. 54, 4961–4970 (2010).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Maji, A. et al. Tuning sterol extraction kinetics yields a renal-sparing polyene antifungal. Nature 623, 1079–1085 (2023).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Konstantinidou, M. & Arkin, M. R. Molecular glues for protein-protein interactions: progressing toward a new dream. Cell Chem. Biol. 31, 1064–1088 (2024).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Prieto Kullmer, C. N. et al. Accelerating reaction generality and mechanistic insight through additive mapping. Science 376, 532–539 (2022).

    Article 
    ADS 
    PubMed 
    PubMed Central 

    Google Scholar
     

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  • The catalytic asymmetric polyene cyclization of homofarnesol to ambrox

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  • Yoder, R. A. & Johnston, J. N. A case study in biomimetic total synthesis: polyolefin carbocyclizations to terpenes and steroids. Chem. Rev. 105, 4730–4756 (2005).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Christianson, D. W. Structural biology and chemistry of the terpenoid cyclases. Chem. Rev. 106, 3412–3442 (2006).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Christianson, D. W. Structural and chemical biology of terpenoid cyclases. Chem. Rev. 117, 11570–11648 (2017).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Ishihara, K., Nakamura, S. & Yamamoto, H. The first enantioselective biomimetic cyclization of polyprenoids. J. Am. Chem. Soc. 121, 4906–4907 (1999).

    Article 
    CAS 

    Google Scholar
     

  • Schäfer, B. Ambrox®. Chem. Unserer Zeit 45, 374–388 (2011).

    Article 

    Google Scholar
     

  • Ungarean, C. N., Southgate, E. H. & Sarlah, D. Enantioselective polyene cyclizations. Org. Biomol. Chem. 14, 5454–5467 (2016).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Eichhorn, E. & Schroeder, F. From ambergris to (−)-ambrox: chemistry meets biocatalysis for sustainable (−)-ambrox production. J. Agric. Food Chem. 71, 5042–5052 (2023).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Stork, G. & Burgstahler, A. W. The stereochemistry of polyene cyclization. J. Am. Chem. Soc. 77, 5068–5077 (1955).

    Article 
    CAS 

    Google Scholar
     

  • Eschenmoser, A., Ruzicka, L., Jeger, O. & Arigoni, D. Zur Kenntnis der Triterpene. 190. Mitteilung. Eine stereochemische Interpretation der biogenetischen Isoprenregel bei den Triterpenen. Helv. Chim. Acta 38, 1890–1904 (1955).

    Article 
    CAS 

    Google Scholar
     

  • Eschenmoser, A. & Arigoni, D. Revisited after 50 years: the ‘stereochemical interpretation of the biogenetic isoprene rule for the triterpenes’. Helv. Chim. Acta 88, 3011–3050 (2005).

    Article 
    CAS 

    Google Scholar
     

  • Wendt, K. U., Poralla, K. & Schulz, G. E. Structure and function of a squalene cyclase. Science 277, 1811–1815 (1997).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Wendt, K., Lenhart, A. & Schulz, G. The structure of the membrane protein squalene-hopene cyclase at 2.0 å resolution. J. Mol. Biol. 286, 175–187 (1999).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Reinert, D. J., Balliano, G. & Schulz, G. E. Conversion of squalene to the pentacarbocyclic hopene. Chem. Biol. 11, 121–126 (2004).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Johnson, W. S. Nonenzymic biogenetic-like olefinic cyclizations. Acc. Chem. Res. 1, 1–8 (1968).

    Article 

    Google Scholar
     

  • Wendt, K. U., Schulz, G. E., Corey, E. J. & Liu, D. R. Enzyme Mechanisms for Polycyclic Triterpene Formation. Angew. Chem. Int. Ed. 39, 2812–2833 (2000).

    Article 
    ADS 
    CAS 

    Google Scholar
     

  • Ohloff, G. in Riechstoffe und Geruchssinn 209–214 (Springer, 1990).

  • Ohloff, G., Schulte‐Elte, K. H. & Müller, B. L. Formation of ambergris odorants from ambrein under simulated natural conditions. Helv. Chim. Acta 60, 2763–2766 (1977).

    Article 
    CAS 

    Google Scholar
     

  • Ohloff, G., Winter, B. & Fehr, C. in Perfumes (eds Müller, P. M. & Lamparsky, D.) 289–296 (Springer, 1994).

  • Ohloff, G., Giersch, W., Pickenhagen, W., Furrer, A. & Frei, B. Significance of the geminal dimethyl group in the odor principle of Ambrox®. Helv. Chim. Acta 68, 2022–2029 (1985).

    Article 
    CAS 

    Google Scholar
     

  • Escher, S., Giersch, W., Niclass, Y., Bernardinelli, G. & Ohloff, G. Configuration‐odor relationships in 5β‐ambrox. Helv. Chim. Acta 73, 1935–1947 (1990).

    Article 
    CAS 

    Google Scholar
     

  • Ohloff, G. in Gustation and Olfaction (eds Ohloff, G. & Thomas, A. F.) 178−183 (Academic Press, 1971).

  • Rossiter, K. J. Structure−odor relationships. Chem. Rev. 96, 3201–3240 (1996).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Hayase, K. & Igarashi, K. Method for producing (−)-ambroxan®. JP patent JP2009/060799 (2007).

  • Breuer, M., Hörster, A. & Hauer, B. Biokatalytische herstellung von ambroxan. Int. patent WO2010/139719 (2009).

  • Breuer, M. et al. Verfahren zur biokatalytischen cyclisierung von terpenen und darin einsetzbare cyclase-mutanten. Int. patent WO2012/066059 (2010).

  • Breuer, M., Hörster, A. & Hauer, B. Biocatalytic production of ambroxan. US patent 2012/0135477 (2011).

  • Eichhorn, E., Schilling, B., Wahler, D., Fourage, L. & Locher, E. Enzymes and applications thereof. Int. patent WO2016/170099 (2015).

  • Moody, T. S., Miskelly, I. R. & Quinn, D. J. Squalene hopene cyclase and use thereof for producing ambroxan. Int. patent WO2018/157021 (2017).

  • Eichhorn, E. et al. Biocatalytic process for (−)-ambrox production using squalene hopene cyclase. Adv. Synth. Catal. 360, 2339–2351 (2018).

    Article 
    CAS 

    Google Scholar
     

  • Eichhorn, E. & Ullmann, C. Squalene hopene cyclase (SHC) variants. Int. patent WO2021/110848 (2021).

  • Eichhorn, E., Hauer, B. & Schneider, A. SHC enzymes and enzyme variants. Int. patent WO2023/175123 (2023).

  • Barrett, A., Ma, T.-K. & Mies, T. Recent developments in polyene cyclizations and their applications in natural product synthesis. Synthesis 51, 67–82 (2019).

    Article 
    CAS 

    Google Scholar
     

  • Felix, R. J., Munro-Leighton, C. & Gagné, M. R. Electrophilic Pt(II) complexes: precision instruments for the initiation of transformations mediated by the cation–olefin reaction. Acc. Chem. Res. 47, 2319–2331 (2014).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Surendra, K. & Corey, E. J. Highly enantioselective proton-initiated polycyclization of polyenes. J. Am. Chem. Soc. 134, 11992–11994 (2012).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Sakakura, A., Ukai, A. & Ishihara, K. Enantioselective halocyclization of polyprenoids induced by nucleophilic phosphoramidites. Nature 445, 900–903 (2007).

    Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar
     

  • Ishihara, K., Ishibashi, H. & Yamamoto, H. Enantio- and diastereoselective stepwise cyclization of polyprenoids induced by chiral and achiral LBAs. A new entry to (−)-ambrox, (+)-podocarpa-8,11,13-triene diterpenoids, and (−)-tetracyclic polyprenoid of sedimentary origin. J. Am. Chem. Soc. 124, 3647–3655 (2002).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Snowden, R. L. et al. Internal nucleophilic termination in biomimetic acid mediated polyene cyclizations: stereochemical and mechanistic implications. Synthesis of (±)-ambrox and its diastereoisomers. J. Org. Chem. 57, 955–960 (1992).

    Article 
    CAS 

    Google Scholar
     

  • Tsuji, N. et al. Activation of olefins via asymmetric Brønsted acid catalysis. Science 359, 1501–1505 (2018).

    Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar
     

  • Zhang, P., Tsuji, N., Ouyang, J. & List, B. Strong and confined acids catalyze asymmetric intramolecular hydroarylations of unactivated olefins with indoles. J. Am. Chem. Soc. 143, 675–680 (2021).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Maji, R. et al. A catalytic asymmetric hydrolactonization. J. Am. Chem. Soc. 145, 8788–8793 (2023).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Properzi, R. et al. Catalytic enantiocontrol over a non-classical carbocation. Nat. Chem. 12, 1174–1179 (2020).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Wakchaure, V. N. et al. Catalytic asymmetric cationic shifts of aliphatic hydrocarbons. Nature 625, 287–292 (2024).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Kaib, P. S. J., Schreyer, L., Lee, S., Properzi, R. & List, B. Extremely active organocatalysts enable a highly enantioselective addition of allyltrimethylsilane to aldehydes. Angew. Chem. Int. Ed. 55, 13200–13203 (2016).

    Article 
    CAS 

    Google Scholar
     

  • Schreyer, L., Properzi, R. & List, B. IDPi catalysis. Angew. Chem. Int. Ed. 58, 12761–12777 (2019).

    Article 
    CAS 

    Google Scholar
     

  • Cheng, J. K., Xiang, S. & Tan, B. Imidodiphosphorimidates (IDPis): catalyst motifs with unprecedented reactivity and selectivity. Chin. J. Chem. 41, 685–694 (2023).

    Article 
    ADS 
    CAS 

    Google Scholar
     

  • Arnold, A. M. et al. Enzyme-like polyene cyclizations catalyzed by dynamic, self-assembled, supramolecular fluoro alcohol-amine clusters. Nat. Commun. 14, 813 (2023).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Arnold, A. M., Pöthig, A., Drees, M. & Gulder, T. NXS, Morpholine, and HFIP: the ideal combination for biomimetic haliranium-induced polyene cyclizations. J. Am. Chem. Soc. 140, 4344–4353 (2018).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Tao, Z., Robb, K. A., Zhao, K. & Denmark, S. E. Enantioselective, Lewis base-catalyzed sulfenocyclization of polyenes. J. Am. Chem. Soc. 140, 3569–3573 (2018).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Berkessel, A., Adrio, J. A., Hüttenhain, D. & Neudörfl, J. M. Unveiling the “booster effect” of fluorinated alcohol solvents: aggregation-induced conformational changes and cooperatively enhanced H-bonding. J. Am. Chem. Soc. 128, 8421–8426 (2006).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Tian, Y., Xu, X., Zhang, L. & Qu, J. Tetraphenylphosphonium tetrafluoroborate/1,1,1,3,3,3-hexafluoroisopropanol (Ph4PBF4/HFIP) effecting epoxide-initiated cation-olefin polycyclizations. Org. Lett. 18, 268–271 (2016).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Colomer, I., Chamberlain, A. E. R., Haughey, M. B. & Donohoe, T. J. Hexafluoroisopropanol as a highly versatile solvent. Nat. Rev. Chem. 1, 0088 (2017).

    Article 
    CAS 

    Google Scholar
     

  • Motiwala, H. F. et al. HFIP in organic synthesis. Chem. Rev. 122, 12544–12747 (2022).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Kaib, P. & List, B. Highly acidic BINOL-derived phosphoramidimidates and their application in the Brønsted acid catalyzed synthesis of α-tocopherol. Synlett 27, 156–158 (2015).

    Article 

    Google Scholar
     

  • Schelwies, M., Paciello, R., Pelzer, R., Siegel, W. & Breuer, M. Palladium-catalyzed low pressure carbonylation of allylic alcohols by catalytic anhydride activation. Chem. Eur. J. 27, 9263–9266 (2021).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Singleton, D. A. & Thomas, A. A. High-precision simultaneous determination of multiple small kinetic isotope effects at natural abundance. J. Am. Chem. Soc. 117, 9357–9358 (1995).

    Article 
    CAS 

    Google Scholar
     

  • Beno, B. R., Houk, K. N. & Singleton, D. A. Synchronous or asynchronous? An “experimental” transition state from a direct comparison of experimental and theoretical kinetic isotope effects for a Diels–Alder reaction. J. Am. Chem. Soc. 118, 9984–9985 (1996).

    Article 
    CAS 

    Google Scholar
     

  • Nguyen, H. & Gagné, M. R. Enantioselective cascade cyclization/protodemetalation of polyenes with N3Pt2+ catalysts. ACS Catal. 4, 855–859 (2014).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Goddard, T. D. et al. UCSF ChimeraX: meeting modern challenges in visualization and analysis. Protein Sci. 27, 14–25 (2018).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Pettersen, E. F. et al. UCSF ChimeraX: structure visualization for researchers, educators, and developers. Protein Sci. 30, 70–82 (2021).

    Article 
    CAS 
    PubMed 

    Google Scholar
     

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  • Dynamic stereomutation of vinylcyclopropanes with metalloradicals

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    Whereas the reactivity principles of organic free radicals are well established and have found widespread implementation in synthetic methodology developments5, there is comparably much less application of metalloradical-based reactivity, especially with regard to homogeneous catalysis and the discovery of potentially unique and enabling reactivity modes. Metalloradical catalysis operates via open-shell metal complexes and intermediates throughout the entire catalytic cycle1,2,3. Exemplary manifestations of this concept in synthesis include the radical relay catalysis of Cu(I), Ti(III) (refs. 7,8), porphyrin-type Co(II) or Fe(III) complexes9, which are based on the transposition of the radical character from the metal to the organic moiety through covalent bonding (Fig. 1). These catalytically generated radicals have been shown to give tamed reactivity10 compared with organic free radicals that do not have the metal bound—a feature also harnessed in several metalloenzymes. However, compared with omnipresent homogeneous metal catalysis based on closed-shell species, there is comparably much less exploitation and implementation of metalloradical catalysis in synthesis. To meet the ever increasing demands for greater sustainability, and to capitalize on the frequent occurrence of odd-oxidation states in non-precious metals, a greater understanding of the principles and potential of metalloradical catalysis would therefore be greatly enabling.

    Fig. 1: Reactivity modes of (di)vinylcyclopropanes.
    figure 1

    ac, Reactivity of organic radicals (a), metals (b) and metalloradicals (c, this work) towards vinylcyclopropanes. d, Established modes of isomerization. e.r., enantiomeric ratio; r.t., room temperature.

    We herein disclose a metalloradical catalysis mode that is initiated by non-covalent interaction via π-coordination, which leads to reactivity that is fundamentally in contrast to organic free radical reactivity and enables a reversible cis/trans-isomerization of vinylcyclopropanes under chiral inversion.

    Vinylcyclopropanes serve as valuable synthetic precursors for cycloadditions or rearrangements and are also key structural units in natural products and bioactive compounds, such as the antivirals Simeprevir (against hepatitis C) or Danoprevir (against COVID-19)11,12. The geometry of the vinylcyclopropane, that is, cis versus trans, impacts its overall function, and stereoselective synthetic approaches to these motifs have been developed accordingly13,14. Although remarkable developments have been achieved, the selectivity of cyclopropane construction can be substrate-specific or involve multistep processes, especially in efforts to reach high enantioselectivity along with cis/trans selectivity, which is well addressed for higher substituted cyclopropanes, but still challenging for 1,2-disubstituted analogues13,15,16,17. A complementary strategy would be the unselective (and potentially enantiopure) synthesis of cis/trans mixtures of vinylcyclopropane derivatives, followed by their isomerization towards a single isomer. Ideally, this process is steerable towards either isomer without compromises on enantiopurity. However, reversible cis/trans isomerization without loss of enantiopurity is fundamentally unknown. If realizable, it could find numerous applications, for example, in strategic uses of divinylcyclopropanes. Such species are more (and sometimes solely) stable in their trans-geometry and feature in several natural products, while the cis-isomer is prone to undergo rearrangement6,18. This orbital-symmetry-controlled stereo-retentive electrocyclic reaction has served as a key strategic transformation in total syntheses, but frequently requires the cis-isomer to be made in situ (owing to its high reactivity), which was achieved predominantly through direct construction of the cyclopropane ring. Construction of the more stable trans-divinylcyclopropane, followed by isomerization to cis requires high temperature (approximately 200 °C) and occurs under racemization19,20,21,22. Such thermally or photochemically induced homolytic scissions towards diradical intermediates23 can also trigger the cis-to-trans isomerization of alternatively substituted cyclopropanes and, with appropriate metal complexation for specific substrates, also at lower temperature (80 °C)24, albeit under loss of enantiopurity towards the racemic, thermodynamic trans-isomer. Isomerization may also occur in a polar mechanism via zwitterionic intermediates, oxidatively25, reductively or under Lewis acid catalysis for specific substrates with the analogous challenges on enantiopurity (that is, its loss)18, although remarkable strides towards photochemically assisted chiral resolution with a chiral catalyst have been made recently for specifically substituted cyclopropyl ketones26,27. There are isolated reports of cis/trans isomerization with a precious metal (Au, Rh)28,29,30,31 at elevated temperature for which the wider potential (that is, scope) and stereospecificity have not (yet) been established. On the other hand, transition metal catalysis based on Ni, Pd, Rh, Ir or Fe has been explored for their addition to vinylcyclopropanes and subsequent follow up chemistry (for example, rearrangement, cycloaddition) towards products of decreased ring-strain32,33,34,35.

    We reported previously that the N-heterocyclic carbene (1,3-bis(2,6-diisopropylphenyl)-1,3-dihydro-2H-imidazol-2-ylidene; IPr)-derived Ni(I) dimer 1 interacts with a double bond to trigger homolytic Ni–Ni scission and formation of an olefin-bound Ni(I) metalloradical complex36. The radical character in this π-coordinated metalloradical is located primarily at the Ni-centre, and this metalloradical consequently differs from covalently attached metalloradicals as introduced above, where the radical character is transposed primarily to the organic moiety via π-bond cleavage and formation of a Csp2-hybridized carbon-centred radical. The Ni(I) metalloradical–olefin complex was found previously to have an inherent driving force for reorganization, which was leveraged in selective olefin migration36. Our preliminary tests with a specific diphenyl substituted vinylcyclopropane indicated a partial isomerization instead of opening, which fundamentally questions the validity of vinylcyclopropanes as mechanistic probes to test for metal-based radical intermediates.

    To date, neither the factors that dictate isomerization versus opening have been elucidated, nor the wider scope and potential of this reactivity in synthesis. We therefore set out to resolve these fundamental questions with a view to devise a selective and general isomerization for vinylcyclopropanes that proceeds without any loss of enantiopurity.

    We initially set out to study the reactivity of Ni(I) dimer 1 with the 4-methoxyphenyl-substituted vinylcyclopropane 2 and evaluated various reaction parameters, which ultimately revealed that, with only 1 mol% of catalyst at room temperature, the cis-cyclopropane 2 was fully transformed to the corresponding trans-isomer within 5 min (in 90:10 trans:cis selectivity and 98% yield) in dioxane (or tetrahydrofuran). Such mildness and extreme speed under such low catalyst loading was remarkable, considering that the Ni-free isomerization requires heating at over 200 °C (ref. 20).

    As outlined above, the thermal isomerization is postulated to proceed via homolytic scission and diradical intermediates that is accompanied with loss of stereochemical information if a chiral starting material is used. We therefore next examined the isomerization for its potential to retain enantiopurity. To this end, we prepared (R,R)-cis2 in >99.9% enantiomeric excess (e.e.) and subjected it to the same isomerization conditions (Fig. 2a). The corresponding trans-product 2 was generated under retention of enantiopurity in 98.8% e.e. (in 88% yield) within 5 min at room temperature using 1 mol% of Ni(I) dimer 1. To the best of our knowledge, such a mild and rapid cis/trans isomerization of vinylcyclopropanes without any loss of enantiopurity is unprecedented to date.

    Fig. 2: Mechanistic insight.
    figure 2

    a, Selective stereoinversion of distal stereocentre. b, Ni(I) metalloradical reactivity. c, Computational study of reaction pathway and orbital analysis of intermediate (Int2).

    Our closer inspection of the absolute stereochemistry of the product revealed that the carbon distal from the vinyl substituent was inverted selectively during isomerization, having generated (R,S)-trans-2 (Fig. 2a). Ni(I) therefore must have a profound effect on the overall reaction path, in locking the stereocentre adjacent to the vinyl substituent, while also influencing the overall driving force to favour the strained, ring-closed product over ring-opened/rearranged products.

    To gain greater insight, we undertook computational studies at CPCM (1,4-dioxane) M06L/def2-TZVP//MN15/6-31G(d)(SDD) level of theory, following a comprehensive methods assessment (see Supplementary Information). The calculations suggest that, owing to the relatively weak Ni–Ni bond in dimer 1, homolytic scission towards the Ni(I) monomer and π-coordination to the olefin occurs readily. The vinylcyclopropane serves solely as π-ligand to the Ni(I) and no radical character is induced to the organic moiety, residing solely on the [Ni(I)Cl(IPr)] with 88% of the radical being located in the dxy orbital of Ni(I) (Fig. 2c). However, a geometric change from tetrahedral to square-planar arrangement of this metalloradical–olefin complex, which is 4.3 kcal mol−1 higher in free energy, leads to partial induction of radical character onto the vinylcyclopropane (see Supplementary Information for details). Subsequent cyclopropane C–C bond cleavage proceeds with an overall activation free energy barrier of 15.8 kcal mol−1 and is endergonic by 7.4 kcal mol−1. The ring-opened intermediate Int2 is square-planar in geometry and the energetically favoured state is of broken-symmetry with two electrons in parallel spin located on the Ni(II)-centre and a radical located on the remote carbon, which resulted from homolytic scission of the C–C bond in the cyclopropane. Our examination of a potential alternative Ni(I)/Ni(III) oxidative addition directly into the cyclopropane ring suggests that, although a higher energy transition state can be located for the direct addition by Ni(I), no Ni(III) intermediate is subsequently formed. Instead, the intrinsic reaction coordinate leads also to Int2 (see Supplementary Information for additional details). Rotation of intermediate Int2 is facile, proceeding with an activation free energy barrier of ΔG = 2.2 kcal mol−1, and subsequent ring closure is thermodynamically downhill relative to the opened intermediate (Fig. 2c). Only carbon (b) is rotatable; the configuration of carbon (a) is locked through the formation of a Ni(II)–π–allyl complex. Our calculations suggest that any alternative isomer (or spin state) of Int2 that could allow for carbon (a) inversion lies 7–25 kcal mol−1 higher in energy than the transition state for ring closure TS3 (see Supplementary Information for additional details). Consequently, the lack of racemization observed under Ni(I)-catalysed isomerization (as opposed to thermal isomerization) means that, although formally in both processes a homolytic scission of the central cyclopropane bond takes place, the Ni-coordination locks one stereocentre through a π–allyl complex, leaving only one centre to rotate (and invert).

    Another notable difference to organic free radical reactivity is that addition of an organic free radical, upon ring opening, delivers a more stabilized radical, both in terms of strain release and also the resonance delocalization gained through the aromatic substituent. In contrast, for the Ni(I) metalloradical, the radical is clearly more stabilized on the Ni-centre in the closed cyclopropane form, in which the vinylcyclopropane serves predominantly as a π-ligand. So called ‘radical clocks’ should hence be used with caution to test for the intermediacy of metal-based radicals.

    Finally, the computed profile also suggests that the Ni(I)-bound cis– and trans-vinylcyclopropanes have only minute differences in energies, which suggests full reversibility of the isomerization process. The equilibrium is shifted ultimately through coordination/decoordination of the Ni(I) so as to reach the overall cis:trans ratio that reflects the inherent cis/trans preference of the substrate itself. For compound 4, the observed ratio indeed matches the substrate’s free energy difference of the cis– and trans-isomer, which is 1.8 kcal mol−1. This suggests that the overall selectivity of the isomerization is readily predictable upon assessment of the inherent energy difference of the cis- and trans-isomer.

    To further confirm the metalloradical nature of the process, we examined whether a separately synthesized IPr-ligand-derived Ni(I) monomer would trigger the analogous reactivity as observed when starting from dimer 1. To this end, we synthesized the known pyridine-coordinated (IPr)Ni(I) monomer 3 (ref. 37) and subjected 5 mol% thereof to cis2 in dioxane at room temperature for 60 min, which resulted in the analogous isomerization to 89% of trans2 (Fig. 2b). Our electron paramagnetic resonance (EPR) measurements of 3 itself in dioxane or with added cis2 substrate gave distinct signals characteristic of the intermediacy of a metal-based radical. While the Ni(I) dimer 1 in dioxane is EPR silent, consistent with its dimeric low-spin configuration, upon addition of the substrate cis2, the EPR spectrum showed a distinct signal characteristic of a metal-based radical, which would be in line with our above calculations and proposed pathway.

    Ni(cod)2/IPr has been used previously for the rearrangement of vinylcyclopropanes32,38. Calculations support the ring-opened/rearranged products to be favoured for 2 with Ni(0), but the process is calculated to be at least 10 kcal mol−1 higher in overall activation barrier than the Ni(I)-based cis/trans isomerization (see Supplementary Information). Our tests with Ni(cod)2/IPr showed diminished reactivity with strong dependence on solvent, substrate and temperature, overall suggesting divergent catalyst speciations. Indeed, we were able to detect an EPR signal characteristic of in situ formed Ni(I). In other words, Ni(cod)2/IPr can engage in rearrangement and/or in situ formation of Ni(I) (ref. 39), overall leading to product mixtures (see Supplementary Information).

    To test the wider synthetic potential of the isomerization, we set out to examine alternative vinylcyclopropane motifs. Variation of the aromatic-substituents had no marked impact; isomerization was equally rapid (5 min, room temperature) and efficient, yielding approximately 90:10 trans:cis selectivity with 82–98% yield with methoxy (2), alkyl (56) or trifluoromethyl-substitution (7) as well as heterocyclic motifs, such as a benzofuran-substituted vinylcyclopropane (9). The same final cis:trans ratio resulted irrespective of whether the exclusive cis-isomer or a cis/trans mixture was subjected to isomerization. Beyond aromatic substitution, vinylcyclopropyl ketones (aromatic and aliphatic, 1012), esters (1315), amides (2122) as well as Weinreb amides (23) also isomerized efficiently to the corresponding trans-products in high selectivity and yield, albeit under slightly longer reaction times of 15 min to 2 h at room temperature. Even the free carboxylic acid was well tolerated and delivered 17 within 15 min at room temperature using 5 mol% of catalyst 1. As there was no by-product formation, purification was achieved by straightforward filtration.

    We next studied whether isomerization of N-methyliminodiacetyl boronate (BMIDA)-, pinacol boronic ester (BPin)- and germyl-substituted vinylcyclopropanes would also be feasible. Given the enabling value of these modular platforms to access a wide range of compounds upon (stereospecific) derivatization40, we envisioned that the straightforward construction of these building blocks as cis/trans mixtures, followed by Ni(I)-catalysed enrichment to the trans-isomer would be of value. Indeed, we observed facile isomerization to 2426, albeit under slightly more forced conditions (60 °C and/or extended reaction time). Capitalizing on the rich stereospecific diversification chemistry of the boronic ester unit can thus allow formation of substituted trans-vinylcyclopropanes with rests that might either be incompatible with Ni(I) catalysis or for which the inherent cis/trans stability difference of the substrate itself may not allow discrimination or induced selectivity in the reversible Ni(I)-catalysed isomerization process. For example, this is the case for alkyl substituted versions, for which only bulky substituents (20) deliver high trans-thermodynamic preference and selectivity.

    We subsequently examined whether additional substitution on the vinyl motif could also be tolerated and synthesized alkenyl cyclopropanes (19, 2836) that contain internal alkenes in E or Z geometry. Although longer reaction times and elevated temperature were found to be necessary for these cases, high trans-yields were seen in all cases under full retention of the olefin (Z or E) geometry. There was no isomerization of the olefin; solely the cyclopropane isomerized, in line with our mechanism in Fig. 2c and the locked π–allyl configuration in Int2. Similarly, 1,1-disubstituted olefins (19, 3536) and higher substitution at the cyclopropane ring (18, 19) were also tolerated and, in the absence of the vinyl group, the starting material was fully recovered (27).

    The scalability of the process was next examined. To this end, we employed 1 g of cyclopropane 16; since it is a liquid, we omitted any solvent and attempted the isomerization of the neat compound, adding solely 0.5 mol% of Ni(I) catalyst 1. After 3.5 h at room temperature, a 92:8 trans:cis mixture of 16 was generated and isolated in 93% yield. Neither additives nor solvent nor heating were necessary, only minute amounts of the non-precious Ni(I) metalloradical was required and full atom-economy was retained in the process.

    As discussed above, the ultimate cis:trans ratio upon stereomutation depends on the inherent energetic prerequisite of the substrate itself. In light of the reversibility of the isomerization, any removal of the trans-isomer should then lead to further enrichment towards more trans-isomer of the remaining mixture, if multiple rounds of Ni(I) based isomerization are conducted. To test for the possibility of such an ‘iterative thermodynamic resolution’, we studied a 50:50 cis/trans mixture of the Weinreb amide 23, which gave a 91:9 trans/cis mixture after 1 h Ni(I) catalysis, as shown in Fig. 3a. We found that 81% of the trans-product was separated readily by column chromatography and the remaining mixture re-subjected to another round of Ni(I) isomerization. This sequential separation/isomerization was then repeated. After three rounds of this thermodynamic resolution, trans23 was obtained in 97% yield and more than 99:1 diastereoselectivity (Fig. 3). Given the existing methodological challenges in accessing 1,2-disubstituted cyclopropanes in high e.e. and diastereometric ratio (d.r.), the metalloradical-based iterative thermodynamic enrichment is a powerful downstream manipulation. Beyond 1,2-disubstitution, we further considered the enantiopure trisubstituted 37, which has the status of an essential pharmacophore as it is not only the key building block of the anti-viral drugs Simeprevir and Danoprevir (against hepatitis C and COVID-19, respectively) but overall featured in a dozen drugs that are either in clinical trial or already approved41. Large-scale industrial processes to 37 have been developed41. We envisioned that the Ni-based iterative thermodynamic enrichment to the opposite enantiomer could greatly advance the preparation, discovery and large-scale synthesis (based on otherwise existing processes) of new anti-viral drugs. Indeed, three rounds of Ni(I)-based enrichment converted 1 g of enantiopure (1R,2S)-37 (1:99 d.r., more than 99% e.e.) to the single enantiomer (1S,2S)-38 in 99:1 d.r., more than 99% e.e. (in 91% yield). Both separation techniques, that is, crystallization and column chromatography, proved effective in this context.

    Fig. 3: Reactivity and selectivity investigations.
    figure 3

    a, Scope of vinylcyclopropane isomerization. b, Scope of isomerization of internal alkenyl cyclopropanes. c, Iterative thermodynamic resolution. aYield determined by quantitative 1H NMR. b1 (0.5 mol%), reaction time 3.5 h. cReaction time 18–24 h at 60 °C. dReaction time 24 h. eReaction time 72 h at 60 °C.

    To further harness the reversibility of the isomerization, its unique capability to retain stereochemical information and its exceptional mildness, we next considered to extend our studies to divinylcyclopropanes. We considered the identified mechanistic features an ideal match to facilitate this strategic transformation, as the reversible nature of the Ni(I)-based isomerization should cause any formed cis-1,2-divinylcyclopropane to undergo stereospecific Cope-type rearrangement and hence be removed from the equilibrium. Overall, the first counter-thermodynamic trans-to-cis isomerization of a divinylcyclopropane under retention of enantiopurity should result, followed by Cope-type rearrangement to generate the enantiomerically pure product.

    As proof-of-principle, we undertook the enantioselective synthesis of (−)-dictyopterene A (39, 88% e.e.; Fig. 4a), which is a class of natural products featured in marine algae. We isolated the corresponding seven-membered ring, that is, (+)-dictyopterene C′ (40) in 84% yield as the exclusive product in 86% e.e., following the Ni(I) catalysed isomerization-Cope sequence at 45 °C over 24 h. The isomerization proceeded under exclusive inversion of the stereocentre distal from the unsubstituted vinyl substituent, in line with our identified mechanism in Fig. 2 and the higher reactivity that we observed for non-substituted vinylcyclopropanes to associate the Ni(I) (cf. Figs. 3a and 3b). Such a mild and enantiopure isomerization-Cope sequence is, to our knowledge, unprecedented. The established corresponding thermal process that starts with enantiopure trans39 is known to require heating at 165 °C over 48 h and proceeds under loss of stereochemistry18. Indeed, we also obtained the seven-membered ring in modest 10% e.e. (enantiomer-40, Fig. 4b).

    Fig. 4: Tandem trans-to-cis isomerization/Cope rearrangement.
    figure 4

    a, Enantiopure synthesis of (+)-dictyopterene C′. b, Loss of stereochemical information in thermal isomerization/Cope sequence. c,d, Application to fused bicyclic scaffolds (c) and spirocycles (d). aYield determined by quantitative 1H NMR. bDeprotection conditions: tetra-n-butylammonium fluoride (five equivalents), acetic acid (five equivalents), 0 °C, 1 h, then r.t., 2 h. Yield over two steps. cReaction performed at 80 °C.

    The phenyl substituted analogue 41 proceeded equally efficiently to 42 under Ni(I) catalysis. Similarly, the silyl enol ether 43 cyclized smoothly to 44, which eventually yields the ketone 45 upon desilylation. The analogous Ni-free, thermal process has been reported to occur under heating at 230 °C (ref. 42) and has found applications in natural product syntheses6.

    We next considered variants that contain one of the vinyl substituents in a cyclic geometry that would, upon contra-thermodynamic trans-to-cis isomerization followed by Cope-type rearrangement, result in a fused bicyclic product. Such processes, but thermally induced (more than 130 °C), have been used strategically in synthesis, including of natural products (for example, (+/−)-beta-himachalene43 or karahanaenone44). We observed that, under metalloradical catalysis, the analogous process happened cleanly at 60 °C starting from the trans-1-(2-vinylcyclopropyl)cyclohex-1-ene and delivered fused bicycle 46 in 97% yield (Fig. 4c). The same process was equally effective with a larger ring (47) or one containing heteroatoms (4850).

    We next considered the synthesis of spirocycles starting from trans-divinylcyclopropanes (Fig. 4d). We obtained spirocycle 52 in 68% under Ni(I)-metalloradical catalysis at 80 °C over 24 h. Silyl enol ethers also proceeded smoothly (at 60 °C), and we generated the corresponding spirocyclic ketones (54, 56) after deprotection of the corresponding silyl enol ethers (53, 55). Rearrangements of such silyl enol ethers were previously thermally conducted at 230 °C (refs. 18,42).

    In summary, this report disclosed the distinct reactivity of a Ni(I)-metalloradical, which, in contrast to organic free radicals or many closed-shell metal catalysts, does not lead to ring opening of a (di)vinylcyclopropane under strain release but instead triggers its reversible isomerization under selective inversion of a single (stereo)centre under mild conditions. In light of the pronounced prevalence of odd-oxidation states in non-precious metal species, this study further manifests their potential to enhance the synthetic toolbox and to meet global demands for greater sustainability and lower energy usage in chemical processes.

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