Tag: Organic Chemistry

  • Unraveling Nature’s Ancient Molecular Kitchen

    Unraveling Nature’s Ancient Molecular Kitchen

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    Origin Emergence of Life Concept

    Research reveals that ancient heat flows could have organized prebiotic molecules into life’s building blocks, providing a natural mechanism for the complex molecular interactions essential for life’s origin.

    Life is complicated. What is true for our everyday existence also holds for the many complex processes that take place inside cells. Proteins are continuously synthesized, cell walls are constructed, and DNA is replicated This can only work when reaction partners converge at the right time in sufficiently high concentrations while suffering little disruption from other substances. Over the course of billions of years, evolution has perfected these mechanisms and ensured that such vital processes occur with high efficiency at the correct place.

    Circumstances were probably a lot more chaotic four billion years ago, when prebiotic reactions created the conditions for the emergence of the first lifeforms. For these reactions, too, it was necessary for the ‘right’ substances to be brought together at the ‘right’ time in one place, so that more complex biomolecules like RNA and amino acid chains could form.

    While such reactions are possible to recreate in the laboratory thanks to manual intermediate steps, it is highly challenging for them to come about in a simple ‘primordial soup’ – that is to say, a very dilute mixture of prebiotic building blocks. So how could nature create suitable conditions for the origin of life?

    A collaboration of LMU biophysicists Dr. Christof Mast and Professor Dieter Braun, coordinator at the ORIGINS Excellence Cluster, and geoscience Professor Bettina Scheu have found a possible answer to this question and recently published their results in the journal Nature. “Our investigations show how simple heat flows could have yielded order amid the chemical chaos of primordial times and fostered the first prebiotic reactions,” explains Mast.

    Heat is produced by a wide range of geological and chemical processes, so presumably heat flows occurred almost everywhere in those distant times. If this heat flows through thin, water-filled cracks, such as arise through the rapid cooling of molten rock, it leads to water convection and to a directed movement of the dissolved molecules in the water along the heat flow. Combined, these two effects – convection and thermophoresis – drive accumulation and selective up-concentration of the various solutes in different places.

    A pinch of this and a sprinkle of that: ingredients for life

    Mast’s group has now experimentally demonstrated this selective accumulation for over 60 different prebiotic building blocks, such as nucleobases and amino acids. They found that these substances can differ strongly in their thermophoresis and therefore enrich differently in the rock fissures. “In a system of interconnected cracks and fissures in the rock, this effect is reinforced and produces mixtures with different compositions of prebiotic substances in each fissure,” explains Thomas Matreux, lead author of the paper. “Although the initial solution was uniformly dilute, and therefore unreactive, simple heat flows can generate an astonishing variety of possible starting conditions for prebiotic chemistry in this manner,” adds Paula Aikkila, the other lead author of the study.

    Without the aid of modern lab technology or the advanced reaction mechanisms of life today, nature could thus have created a ‘molecular kitchen’ in large geological network systems, in which all the ingredients of life were sorted and ready. As part of the Collaborative Research Centre “Molecular Evolution in Prebiotic Environments” (CRC 392), the researchers now plan to investigate how many ‘dishes’ of life can be ‘prepared’ in this system.

    Reference: “Heat flows enrich prebiotic building blocks and enhance their reactivity” by Thomas Matreux, Paula Aikkila, Bettina Scheu, Dieter Braun and Christof B. Mast, 3 April 2024, Nature.
    DOI: 10.1038/s41586-024-07193-7



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  • Molecular Memory Breakthrough: Entering a New Era of Data Storage

    Molecular Memory Breakthrough: Entering a New Era of Data Storage

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    Fulgimide Photoswitches

    Some molecules respond to external light pulses by changing their structure and holding certain states that can be switched from one to another. These are…

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  • ‘Bandit’ algorithms help chemists to discover generally applicable conditions for reactions

    ‘Bandit’ algorithms help chemists to discover generally applicable conditions for reactions

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    • RESEARCH BRIEFINGS

    In organic chemistry, finding conditions that enable a broad range of compounds to undergo a particular type of reaction is highly desirable. However, conventional methods for doing so consume a lot of time and reagents. A machine-learning method has been developed that overcomes these problems.

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  • Groundbreaking New Method Transforms Plastic Trash Into Chemistry Treasure

    Groundbreaking New Method Transforms Plastic Trash Into Chemistry Treasure

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    Artistic Depiction of Radicals Being Generated From Plastic Fibers

    Hokkaido University researchers have developed a groundbreaking method to repurpose plastic waste by using it to initiate radical chain reactions for detoxifying hazardous chemicals. This approach, which enhances safety and efficiency while addressing the environmental issue of plastic waste, paves the way for sustainable and economically attractive chemical processes. Artistic depiction of extremely reactive molecules called radicals being generated from plastic fibers. Credit: Koji Kubota and Hajime Ito

    Scientists use everyday plastics to initiate innovative chain reactions, developing a method to recycle plastic waste and improve both safety and efficiency in the process.

    Single-use plastics are a major environmental concern, but now, rather than being disposed of as garbage, used plastic bags from the grocery stores could be utilized to carry out a reaction that can detoxify hazardous chemicals.

    A team led by researchers at the Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University has developed a method that uses common plastic materials instead of potentially explosive compounds to initiate radical chain reactions. This approach significantly increases the safety of the process while also providing a way to reuse common plastics such as polyethylene and polyvinyl acetate. These findings have been published in the Journal of the American Chemical Society.

    Using Mechanical Force To Trigger a Radical Chain Reaction

    (Top) General scheme for using mechanical force to trigger a radical chain reaction. (Bottom) Shreds of a grocery bag were utilized to initiate a reaction in a ball mill jar. Credit: Koji Kubota, et al. Journal of the American Chemical Society. December 22, 2023

    Researchers utilized a ball mill, a machine that rapidly shakes a steel ball inside a steel jar to mix solid chemicals. When the ball slams into the plastic, the mechanical force breaks a chemical bond to form radicals, which have a highly reactive, unbonded electron. These radicals facilitated a self-sustaining chain reaction that promotes dehalogenation— i.e., the replacement of a halogen atom with a hydrogen atom—of organic halides.

    Enhancing Chemical Processes

    “The use of commodity plastics as chemical reagents is a completely new perspective on organic synthesis,” said Associate Professor Koji Kubota. “I believe that this approach will lead to not only the development of safe and highly efficient radical-based reactions, but also to a new way to utilize waste plastics, which are a serious social problem.”

    Koji Kubota and Hajime Ito

    Associate Professor Koji Kubota (left) and Professor Hajime Ito (right) of the research team at the Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University. Credit: WPI-ICReDD

    The reuse of waste plastic was demonstrated by adding plastic shreds of a common grocery bag to the ball mill jar and successfully carrying out the reaction. The team also showed their method could be applied to the treatment of highly toxic polyhalogenated compounds, which are widely used in industry. Polyethylene was employed to initiate a radical reaction that removed multiple halogen atoms from a compound commonly used as a flame retardant, thus reducing its toxicity.

    Researchers anticipate this method will garner the attention of the industry due to its advantages in cost and safety.

    “Our new approach using stable, cheap, and abundant plastic materials as initiators for radical chain reactions holds the significant potential to foster the development of industrially attractive, safe, and highly efficient chemical processes,” commented Professor Hajime Ito.

    The study was funded by the Japan Society for the Promotion of Science, the Japan Science and Technology Agency, and the Ministry of Education, Culture, Sports, Science and Technology of Japan



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