Tag: T-Cell

  • Natural killer cells lead the charge in cancer treatment innovation

    Natural killer cells lead the charge in cancer treatment innovation

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    In a recent review published in the journal Nature, researchers collated available publications on natural killer (NK) cells – innate immune cells involved in recognizing and eliminating cells in distress, particularly virus-infected cells and tumors. They focus on reviewing ongoing preclinical and clinical research in the field of NK therapeutics, primarily elucidating the role of NK cells in cancer immunity. They further explore the potential for bioengineering approaches to harness NK cells via the development of genetically modified NK cells, immune checkpoint inhibitors, and cell engagers.

    Review: Natural killer cell therapies. Image Credit: Numstocker / ShutterstockReview: Natural killer cell therapies. Image Credit: Numstocker / Shutterstock

    What are NK cells, and why should we care?

    Natural killer cells (NK cells) are innate lymphoid cells (ILCs), white blood cells that destroy infected and diseased cells, like virus-infected and cancerous cells. These cells were discovered relatively recently in 2008 and are naturally produced in the bone marrow. They can exist in populations of up to 2 x 1010 NK cells per individual, thereby representing 1% of all immune cells and 2% of all lymphocytes.

    Research has revealed that in healthy humans, NK cells can be found in the liver, blood, and bone marrow, serving cytolytic and cytokine-secreting functions. Scientists have traditionally classified these immune cells into two main types based on their surface molecules – CD56 (primarily cytokine-secreting function) and CD16a (predominantly cytotoxic function). More recent RNA-based classification approaches have revealed the presence of three NK cell families:

    Type 1 NK (NK1) cells correspond to the traditional CD56dimCD16+ NK cells and are the most abundant in blood. They are characterized by the strong expression of CD16 (FCGR3A) and cytotoxicity effector molecules (GZMA, GZMB, and PRF1). They have recently been discovered to sometimes express genes, including SPON2, whose biological function remains to be unraveled.

    Type 2 NK (NK2) cells correspond to the traditional CD56brightCD16 NK cells and are unique in their transcriptional signatures, chemokine profiles, cell surface markers, and their characteristic strong expression of TCF1 (a transcriptional factor). Type 3 NK (NK3) cells are the most recently discovered of these three cohorts and are characterized by CD16dimadaptiveNKG2Chigh and CD57+ cells. The relative abundance of these cohorts has been observed to vary depending on pathophysiological conditions and anatomical localization.

    NK cells have the unique properties of transitioning into an ILC1-like state, allowing them to acquire hypothesized antitumor functions. Combined with their ability to recognize cells in distress and the impressive responses of CAR T-cell therapy (modified T-cells with anti-cancer properties) and immune checkpoint inhibitors over a spectrum of malignancies, NK cells are a crucial focus of future anti-cancer therapeutics research.

    What are NK cells’ anti-cancer benefits?

    In addition to the aforementioned ILC1-like state, CAR T-cell therapy, and checkpoint inhibitory functions of NK cells, novel research aims at devising mechanisms by which the tumors can no longer evade T-cells and, by extension, NK cells. Unlike other T-cell populations, NK cells are not restricted by antigen-specific priming.

    More applicably, NK cells are capable of recognizing cells in distress irrespective of their embryonic origin or distress trigger. NK cells are further known to produce IFNγ and similar biomolecules capable of preventing metastasis by forcing malignant cells into a state of dormancy, and FLT-3L, XCL1, and CCL5, which bolster the anti-cancer properties of dendritic cells and other lymphocytes.

    “…a very important distinguishing factor between T and NK cells lies in the increase in NK cell function when tumour cells downregulate MHC-I expression on the cell surface. Loss of MHC-I expression is a common T cell immune evasion mechanism. By contrast, as NK cells express inhibitory MHC-I receptors, MHC-I loss contributes to the recognition and efficient elimination of tumour cells by NK cells. Thus, several features of NK cell biology make their use an interesting and complementary to other modalities used in oncology, including monoclonal-antibody-based therapies, cell-based therapies or a combination of both.”

    Inhibitory checkpoints

    Research has discovered that the activity of NK cells can be selectively switched on and off via the use of their cell-surface inhibitory receptors such as NKG2A, T cell immunoglobulin, and mucin domain-containing 3 (TIM-3), lymphocyte activation gene 3 (LAG3), and T cell immuno-receptor with Ig and immunoreceptor tyrosine-based inhibitory motif domains (TIGIT).

    Preclinical and clinical trials are currently in progress to identify and test the efficacy of monoclonal antibodies in this selective activation process. For example, blocking NKG2A has been shown to unleash both NK- and T-cell-mediated antitumor responses, particularly against lung cancer. Similarly, blocking the LAG3 receptor has been shown to boost NK cell antitumor immune function; TIM-3 blocking can promote the NK-cell-mediated generalized elimination of malignant cells, while TIGIT blocking can enhance NK cell proliferation and their antitumor activities against malignant B cells.

    Can NK cells be used as drug products?

    A growing body of evidence suggests that NK cells can perform drug functions, especially in the field of oncological biotherapy. A number of studies are currently establishing the autologous and allogenic applications of NK cells, elucidating why, despite the apparent dearth of NK cell-based commercially available drugs, this is set to change in the near future.

    “These approaches further diverge into distinct modalities, spanning from in vitro pre-activation techniques to cutting-edge genomic editing interventions. Several cancer conditions and oncological treatments, notably chemotherapy, are known to attenuate both the abundance and the operative capacity of patient’s endogenous NK cells. This depletion underscores the therapeutic rationale for adoptive NK cell transfer, a strategy to enhance the efficacy and resilience of NK cells within the TME.”

    Allogenic NK cell infusions are of particular interest given their immediate bioavailability, absence of graft-versus-host disease, and robust anti-cancer potential against various malignancies. Parallel research aimed at enhancing NK cell performance is also ongoing, with ex vivo conditioning and genetic engineering presenting the most promising avenues for NK cell optimization.

    Challenges to NK cells’ clinical adoption?

    The present review highlights ten challenges conventional research must overcome before NK cell therapeutics receive wider medical adoption beyond current experimental procedures. These challenges can be condensed into three main aspects: 1. Improving the bioavailability of NK cells, especially at the target tumor site, 2. Enhancing the viability and cytotoxicity of NK cells, and 3. The standardization and optimization of treatment procedures using NK cells.

    Conclusions

    The present review explores the potential and feasibility of NK cells’ clinical applications and summarizes ongoing research on these recently discovered lymphocytes. The review reveals that despite less than two decades of research in the field, NK cells are emerging as a safe, practical, and potentially widely accessible means of clinical therapy, particularly antitumor. While challenges do exist in the adoption of NK cell therapies by mainstream medicine, studies aimed at overcoming these challenges are already underway, bringing the future of NK cell clinical interventions closer than ever.

    Journal reference:

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  • Exome sequencing unravels complex genetic diagnoses in growth disorders

    Exome sequencing unravels complex genetic diagnoses in growth disorders

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    In an article published in the Journal of Pediatrics, researchers based in Brazil describe the case of a nine-year-old boy admitted to hospital with multiple symptoms and overlapping conditions that made diagnosis difficult, such as short stature, thin tooth enamel (dental enamel hypoplasia), moderate mental deficiency, speech delay, asthma, mildly altered blood sugar, and a history of recurring infections in infancy. 

    The team used exome sequencing, in which only the protein-coding portion of the genome is analyzed, to look for genetic mutations, and found them in GCK and BCL11B. As a result, the diagnosis was monogenic diabetes and T-cell abnormality syndrome, both of which are rare diseases. Identification of the exact cause of the problem and the discovery of a blood sugar alteration significantly influenced their choice of treatment. 

    This is one of six cases involving syndromic growth disorders with multiple genetic diagnoses (two or more distinct genetic conditions in the same patient) described in the article, which concerns a study conducted by researchers at the University of São Paulo’s Medical School (FM-USP) with FAPESP’s support. 

    Exome sequencing is a very useful technology to reduce what we call the diagnostic odyssey – the long journey patients with rare or complex conditions have to undergo until they receive a proper diagnosis. Ten years ago, private labs charged BRL 10,000. The price has now fallen to BRL 4,000 [about USD 800]. That’s still a lot of money for a test, but it has proved essential to accurate diagnosis and treatment in cases of this kind.”


    Alexander Augusto de Lima Jorge, last author of the article

    The team sequenced the exomes of 115 patients with syndromic growth disorders that had hitherto unknown causes, diagnosing 63 on the basis of the genetic analysis; 9.5% of these had a multiple diagnosis, far more than in previous studies. 

    “The cases involved two or more rare monogenic conditions in the same patient. Such cases are very hard to diagnose, especially by clinical assessment alone. The study highlights the need to use broad genetic tests such as whole exome or whole genome sequencing for these patients as the only way to identify the rare diseases that explain such clusters of conditions,” Lima Jorge said. 

    There are numerous rare diseases, including growth disorders, so it is naturally difficult to identify many of them, he added. Between 5% and 10% of the world population is believed to have a rare disease. 

    Short stature or tall stature is not a diagnosis but a clinical finding. “Short stature may have an external cause, such as an infection or malnutrition. Even so, genetic factors will always be important to growth. In healthy children with short or tall stature as the only manifestation, there will probably be a polygenic basis [where stature is influenced by several genetic variants], but in syndromic growth disorders, in which short or tall stature is accompanied by other findings such as mental deficiency, deafness, autism spectrum disorder or malformation, an alteration in one or more genes is more likely as a justification for the complex phenotype involved,” Lima Jorge said. 

    In light of the results, the researchers advocate recognition of multiple genetic diagnoses as a possibility in complex cases of growth disorder, opening up novel prospects for treatment and genetic counseling for such patients, in place of the typical paradigm that calls for a single diagnosis to explain all findings. 

    In the article, the researchers state that the development of next-generation sequencing techniques such as whole exome or whole genome sequencing has made selecting a single gene as the candidate to explain a case unnecessary. This particular benefit has proved useful in the research environment to foster the discovery of novel disease-associated genes, to further the study of conditions with a high degree of genetic heterogeneity, and to help care for patients with complex syndromic conditions, where diagnoses cannot be obtained by traditional clinical and genetic methods. 

    Several challenges noted by Lima Jorge include the high cost of genetic tests and the fact that exome sequencing has a success rate of about 50% in the diagnosis of complex cases. In other words, about half the patients submitted to this kind of analysis will have to go on looking for a conclusive diagnosis.

    Source:

    Journal reference:

    Rezende, R. C., et al. (2024). Exome Sequencing Identifies Multiple Genetic Diagnoses in Children with Syndromic Growth Disorders. The Journal of Pediatrics. doi.org/10.1016/j.jpeds.2023.113841.

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  • Monash-led study unveils potential long-term treatment for lupus

    Monash-led study unveils potential long-term treatment for lupus

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    In a recent study published in Nature Communications, a group of researchers assessed Smith (Sm)-specific regulatory T cells (Tregs) efficacy in halting lupus nephritis (LN) by engineering and testing epitope-targeted Tregs for systemic lupus erythematosus (SLE) treatment.

    Study: Smith-specific regulatory T cells halt the progression of lupus nephritis. Image Credit: megaflopp/Shutterstock.com
    Study: Smith-specific regulatory T cells halt the progression of lupus nephritis. Image Credit: megaflopp/Shutterstock.com

    Background 

    Tregs play a crucial role in immune balance, with their dysfunction linked to autoimmune conditions like SLE. Treg therapies, especially those targeting specific antigens, have shown promise in controlling autoimmune responses. LN, a critical SLE manifestation, is often associated with the Sm autoantigen and specific human leukocyte antigen (HLA) haplotypes, suggesting a targeted therapeutic approach might be effective.

    Further research is needed to optimize Sm-specific Treg therapy for broader clinical application and to understand its long-term efficacy and safety in diverse SLE patient populations.

    About the study 

    The present study utilized a biophysical affinity binding assay. Researchers screened peptides derived from Sm proteins against HLA-DR15, identifying those with the highest affinity. This thorough approach enabled the calculation of binding affinities and half-life estimations, crucial for selecting epitopes with the potential to evoke a strong T-cell response.

    Ethical adherence was paramount, with all procedures conforming to the Declaration of Helsinki and receiving approval from relevant ethics committees. The study’s rigorous inclusion criteria ensured that only suitable participants, informed and consenting, contributed to the findings.

    Further investigations into the immunogenicity of top-ranking Sm epitopes utilized whole blood from an HLA-DR15 homozygous donor. This approach allowed for the differentiation of monocytes into dendritic cells and the subsequent activation of Cluster of Differentiation 4 (CD4)+ T cells, providing a robust platform for assessing T-cell responses to Sm epitopes.

    The process extended to detailed methodologies for expressing and purifying HLA-DR15, crucial for understanding the intricate interactions between Sm epitopes and the immune system. Protein crystallization and structural determination further illuminated the binding mechanisms at play, offering insights that could pave the way for novel therapeutic strategies.

    This comprehensive study not only identified potential targets for autoimmune therapy but also set a high standard for methodological rigor and ethical compliance, promising future research in this critical area of medicine.

    Study results 

    The researchers explored the potential of Tregs, particularly in SLE and its severe manifestation, LN. Tregs, known for their role in maintaining immune equilibrium, become a focus due to their decreased numbers or malfunction in autoimmune diseases. Targeted therapies using Tregs, especially those engineered to be antigen-specific, offer a promising approach to suppress the pathogenic autoactivity inherent in these conditions.

    The study embarked on identifying immunodominant Sm protein epitopes, given their association with LN and specific HLA haplotypes. Through a thorough screening process involving 145 overlapping peptides from Sm proteins, researchers identified a set of epitopes with strong binding affinity to HLA-DR15, with SmB/B’58-72 standing out for its binding stability and capacity to induce T-cell proliferation, marking it as a prime candidate for further exploration.

    Diving deeper, the team elucidated the crystal structure of the SmB/B’58-72 epitope in complex with HLA-DR15, revealing key amino acid residues pivotal for T-cell activation. This structural insight laid the groundwork for identifying high-affinity T-cell receptors (TCRs) specific to the SmB/B’58-72 epitope. Leveraging high-throughput sequencing and binding assays, they isolated TCRs with potent affinity, notably TCR1, which demonstrated significant clonal expansion and functional activity indicative of its therapeutic potential.

    The translational leap involved engineering Tregs with the identified Sm-specific TCRs using lentiviral vectors. These engineered Tregs not only retained their regulatory phenotype but also showcased enhanced specificity and suppressive capacity against Sm epitope-induced pro-inflammatory responses, both in vitro and in a humanized mouse model of LN. This specificity was further evidenced by their ability to form immune synapses upon encountering their target antigen, leading to effective T-cell activation and suppression of autoimmunity.

    Moreover, the study highlighted the therapeutic efficacy of these Sm-specific Tregs in suppressing SLE patient-derived autoreactivity, as demonstrated through in vitro cytokine profiling and in vivo models of LN. Mice treated with Sm-Tregs exhibited significantly less renal injury and proteinuria compared to those receiving polyclonal Tregs or no treatment, underscoring the potential of antigen-specific Tregs in restoring immune tolerance and halting disease progression.

    This research opens new avenues for targeted immunotherapy in autoimmune diseases, emphasizing the power of precision medicine in addressing complex disorders like SLE and LN. Harnessing the specificity and regulatory capabilities of Tregs presents a promising strategy for developing more effective and personalized treatments, marking a significant step forward in the battle against autoimmune diseases.

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  • New study reveals key to blocking infection

    New study reveals key to blocking infection

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    As the HIV virus glides up outside a human cell to dock and possibly inject its deadly cargo of genetic code, there’s a spectacularly brief moment in which a tiny piece of its surface snaps open to begin the process of infection.

    Seeing that structure snap open and shut in mere millionths of a second is giving Duke Human Vaccine Institute (DHVI) investigators a new handle on the surface of the virus that could lead to broadly neutralizing antibodies for an AIDS vaccine. Their findings appear Feb. 2 in Science Advances.

    Being able to attach an antibody specifically to this little structure that would prevent it from popping open would be key. Their findings appear Feb. 2 in Science Advances.

    The moving part is a structure called envelope glycoprotein, and AIDS researchers have been trying to figure it out for years because it is a key part of the virus’ ability to dock on a T-cell receptor known as CD4. Many parts of the envelope are constantly moving to evade the immune system, but vaccine immunogens are designed to stay relatively stable.

    Everything that everybody’s done to try to stabilize this (structure) won’t work, because of what we learned. It’s not that they did something wrong; it’s just that we didn’t know it moves this way.”


    Rory Henderson, lead author, structural biologist who is an associate professor of medicine in DHVI

    Postdoctoral researcher and study co-author Ashley Bennett offers a play-by-play: As the virus feels for its best attachment point on a human T-cell, the host cell’s CD4 receptor is the first thing it latches onto. That connection is what then triggers the envelope structure to pop open, which in turn, exposes a co-receptor binding site “and that’s the event that actually matters.”

    Once both molecules of the virus are bound to the cell membrane, the process of injecting viral RNA can begin. “If it gets inside the cell, your infection is now permanent,” Henderson said.

     “If you get infected, you’ve already lost the game because it’s a retrovirus,” Bennett agrees.

    The moving structure they found protects the sensitive co-receptor binding site on the virus. “It’s also a latch to keep it from springing until it’s ready to spring,” Henderson said. Keeping it latched with a specific antibody would stop the process of infection.

    To see the viral parts in various states of open, closed and in-between, Bennett and Henderson used an electron accelerator at the Argonne National Laboratory outside Chicago that produces X-rays in wavelengths that can resolve something as small as a single atom. But this expensive, shared equipment is in high demand. The AIDS researchers were awarded three 120-hour blocks of time with the synchrotron to try to get as much data as they could in marathon sessions. “Basically, you just go until you can’t anymore,” Bennett said.

    Earlier research elsewhere had argued that antibodies were being designed for the wrong shapes on the virus and this work shows that was probably correct.

    “The question has been ‘why, when we immunize, are we getting antibodies to places that are supposed to be blocked?’” Henderson said. Part of the answer should lie in this particular structure and its shape-shifting.

    “It’s the interplay between the antibody binding and what this shape is that’s really critical about the work that we did,” Henderson said. “And that led us to design an immunogen the day we got back from the first experiment. We think we know how this works.”

    This research was supported by the National Institutes of Health (UM1AI14437, R01AI145687, U54AI170752, P30 GM124169, S10OD018483), the Department of Energy (DE-AC02-06CH11357) and the DOE Office of Biological and Environmental Research.

    Source:

    Journal reference:

    Bennett, A. L., et al. (2024) Microsecond dynamics control the HIV-1 Envelope conformation. Science Advances. doi.org/10.1126/sciadv.adj0396.

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