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Cryptocurrency will be used to reward peer reviewers for an experimental title called ResearchHub Journal.Credit: bizoo_n/Getty
The experimental publication ResearchHub Journal is paying peer reviewers the equivalent of US$150 per review in a specially developed cryptocurrency. The journal is hosted on ResearchHub, a platform backed by crypto entrepreneur Brian Armstrong, which aims to make science more open and efficient. “Getting paid to review is justice,” says molecular-biology consultant Pedro Paulo Gattai Gomes. But some other experts are cautious that the journal might struggle to gain a foothold in research publishing because of its unusual approach, and that the use of cryptocurrency could dissuade cautious academics.
Nature | 5 min read
Using tail-recognition software, researchers have tracked a humpback whale (Megaptera novaeangliae) over 13,000 kilometres — the longest migration ever seen for the species. The whale’s odyssey, from the Atlantic off Colombia to the coast of Tanzania in the Indian Ocean over the course of almost a decade, is unusual for humpbacks, who normally stick to one section of the ocean. “This could be a simple story of a deeply confused whale,” says marine biologist Alexander Werth. “But it’s more likely that this intrepid explorer is a lonely male desperately seeking mates.”
Images of a young galaxy captured by NASA’s James Webb Space Telescope have given astronomers a glimpse of what the Milky Way might have looked like when it first formed. The images capture the galaxy, dubbed Firefly Sparkle after its resemblance to the bioluminescent insects, in the process of being assembled from groups of stars around 600 million years after the beginning of the universe.
a) Light from Firefly Sparkle and its surrounding stars was bent by the gravitational force of a cluster of other galaxies between it and the telescope, an effect called gravitational lensing. The effect of this distorted path is that the background object seems enlarged, as if it were being viewed through a cosmic magnifying glass. b) Images from the telescope captured Firefly Sparkle and two other young galaxies nearby, appropriately dubbed Firefly-Best Friend and Firefly-New Best Friend. (Nature News & Views | 7 min read, Nature paywall)
Nature’s 10: the people who shaped science
Credit: Stefanie Loos for Nature
Research-integrity sleuth Anna Abalkina has been rooting out fraud in scientific literature for more than a decade. Her work calls out plagiarism, paper mills and hijacked journals — scam websites that clone authentic journal titles to con authors out of publication fees — with a particular focus on her homeland, Russia. This November, Abalkina flagged an unusually bold effort to clone journal sites from major publishers including Springer Nature and Elsevier, spooking the fraudsters behind the scheme into removing links to papers published in cloned journals from their website.
Nature | 5 min read
Read more from Nature’s 10: a series of profiles about the people behind 2024’s key scientific developments
Features & opinion
Artificial intelligence (AI) is helping scientists to reveal what animals are saying to each other. Researchers have already leveraged the tool to discover that both African savannah elephants (Loxodonta africana) and common marmoset monkeys (Callithrix jacchus) have names. But it’s not as simple as building Google Translate for primate chatter. Such systems need huge amounts of well-defined training data, and it’s still an open question whether animals even have ‘language’ (and what ‘language’ is). Instead, AI can do things such as help researchers comb through recordings, separate sounds and assign them to individual animals. The ultimate goal, for many, is to help protect the creatures they’re studying. “If it were possible for humans to hear from other animals in their own words, ‘Hey, stop fucking killing us’, maybe people would actually do that,” says behavioural ecologist Mickey Pardo.
Nature | 15 min read
This article is part of Nature Outlook: Robotics and artificial intelligence, an editorially independent supplement produced with financial support from FII Institute.
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Satellites can be effective environmental monitoring tools, but they’re no silver bullet, warns satellite expert Lorna Finman. To accurately measure releases of the potent greenhouse gas methane, satellites should be paired with boots on the ground to verify findings and overcome issues such as weather patterns that can distort readings. “Methane monitoring is too important to leave to one tool alone,” says Finman. “Let’s make sure we get this right.”
Nature | 5 min read
“We cannot expect those who do not understand how we live to build tools for us,” writes artificial-intelligence researcher Nyalleng Moorosi. She argues that making AI systems that are useful for research in Africa is not simply a case of adding more data to Western-built models, which are rarely trained on African languages or culture-specific data. Instead, the research community in Africa deserves opportunities to develop its own AI systems and regulations.
Nature | 5 min read
QUOTE OF THE DAY
The seabed is littered with ‘ticking time bombs’ — wrecks of ships, for example those sunk in the two World Wars, says archaeologist Fraser Sturt. Just how many wrecks there are, and whose responsibility it is to clear up the deep sea, isn’t clear, but international action and collaboration can curtail the environmental risk they pose. (The Conversation | 6 min read)
Today, I’m invested in an epic feline love story. Two unrelated Amur tiger (Panthera tigris altaica) cubs, Boris and Svetlaya, were raised together in captivity after being found orphaned. They were released separately into the wild at 18-months old. A year later, Boris had travelled almost 200 kilometres to where Svetlaya had settled, and they later became proud parents to their own litter.
Let us know how we can get you more invested in this newsletter at [email protected].
Thanks for reading,
Jacob Smith, associate editor, Nature Briefing
With contributions by Flora Graham
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A 2022 regional study found that creatinine is an inadequate biomarker for kidney function in people in South Africa, Malawi and Uganda.Credit: Sandra Maytham-Bailey, ARK Study
In 2020, the Black Lives Matter movement forced the United States to reckon with systemic racism and its causes and manifestations. Driven partially by the disproportionate toll that the COVID-19 pandemic had on African Americans, the protests forced the medical community to question how to address racial health disparities, including how clinical practice itself can perpetuate systemic racism.
One prominent issue was the racial categories that are used in medical diagnostics. Although genetic ancestry can have ramifications for health, race is a social construct that does not map well to humanity’s genetic and physiological variability. “Utilizing that in the context of biologically driven decision-making is faulty. It’s fraught with pitfalls,” says physician Ebony Boulware, dean of Wake Forest University School of Medicine in Winston-Salem, North Carolina.
Medical tests that take race into account reinforce the idea that there are essential biological differences between ethnicities, which has long been debunked, Boulware adds.
Part of Nature Outlook: Medical diagnostics
Until 2020, US clinicians routinely interpreted diagnostic tests that estimate kidney function using equations that incorporated race — specifically whether a person was Black or not. In July 2020, the American Society of Nephrology and the US National Kidney Foundation announced a joint task force to review this situation1.
Kidney disease ranks among the starkest racial health disparities in the United States: kidney failure affects African Americans roughly four times more frequently than those of European ancestry.
The equations that underpin the medical tests under review used the level of creatinine in a person’s blood serum to estimate how quickly their kidneys filter blood — a metric known as estimated glomerular filtration rate (eGFR). Creatinine is a waste product that is made by the breakdown of skeletal muscle and was recognized as a potential marker of renal function in the 1920s and 1930s. Testing for it is cheap, quick and ubiquitous, essential characteristics of a diagnostic test. By contrast, getting a more accurate measured glomerular filtration rate requires injecting a person with an marker and then periodically collecting samples of blood or urine for several hours — which is expensive, time consuming and available only in specialist settings. eGFR equations are therefore central to detecting kidney disease (which is asymptomatic in its early stages), tracking disease progression and informing treatment decisions. An eGFR below 90 millilitres per minute signals kidney disease and a sub-15 eGFR indicates kidney failure. People are typically put on a waiting list for a kidney transplant when their eGFR reaches 20.
A coefficient for race was introduced into eGFR equations2 in 1999 — and included in a 2009 equation3 — to account for average differences in how creatinine levels relate to kidney function in Black people compared with other ethnic groups. Kidney function does not differ between groups, but African Americans tend to have higher creatinine levels than do white people and those from other ethnic groups. Creatinine levels are inversely related to eGFR, therefore introducing the coefficient meant that for a given creatinine value, Black individuals were assigned higher eGFR scores. That is, their kidneys were rated healthier than they would be for a white person with the same creatinine level.
At the time, this tweak to the formula was uncontroversial. “When they put this correction factor in, they were able to get closer to the true GFR,” says task force co-chair Neil Powe, a physician at the University of California, San Francisco. But then, Powe says, “it became socially unacceptable to use race in this biological measure”.
Studies also emerged showing that the coefficient was causing the healthiness of African Americans’ kidneys to be systematically overestimated4 (see ‘Kidney disease inequity’). “Having this racial designator in there,” Boulware says, “ironically and tragically put the vulnerable group at increased risk of not getting the recommended care, or getting it later.”
Source: NIH, NIDDK
The task force reviewed numerous ways to eliminate the race coefficient, issuing three recommendations1 in September 2021. First, when using creatinine-based tests, a new, race-free equation should be adopted. Second, when creatinine tests yield an uncertain result, physicians should also — if it’s available — use a second biomarker called cystatin C, which has never required a race coefficient. Third, research into the development of better kidney biomarkers should continue.
The first recommendation had an immediate effect. While the task force had been meeting, the Chronic Kidney Disease Epidemiology Collaboration (CKD-EPI) had independently developed a new, race-free creatinine eGFR equation, which was also published5 in September 2021. Following the task force’s recommendation, the United States quickly adopted this 2021 CKD-EPI equation. “I’ve never seen anything taken up so rapidly in medical care,” says Powe.
But adoption has been much patchier beyond the United States. European nephrologists have argued against using it. And in 2022, nephrologists in Africa questioned using creatinine as a biomarker altogether on that continent6.
A racialized biomarker
Biomarkers used to estimate GFR are molecules that steadily enter the blood from bodily tissues, which are then filtered out by the kidneys. The concentrations of such molecules in the blood reflect the equilibrium of these two processes.
To develop equations for using a biomarker on a large scale, researchers recruit volunteers, who should reflect the demographics of the population that will need the biomarkers. The level of the biomarker in a person’s blood is then plotted against each person’s measured GFR to derive an equation that best describes the relationship between the biomarker and kidney function. Acceptable performance for a creatinine equation typically gives an eGFR within 30% of a person’s measured GFR in 80–90% of cases5.
Researchers can also check whether splitting their sample by definable characteristics — such as sex, age, weight or race — yields modified equations that better predict measured GFR for each subgroup.
The glomerulus, a network of small blood vessels in the kidney, plays an important part in filtering blood. Commonly used methods to measure glomerular filtration rate — a metric of how well the kidneys function — have led to systematic overestimation of kidney health in Black people, sometimes leading to delayed treatment.Credit:Thomas Deerinck NCMIR/SPL
Because creatinine comes from the breakdown of skeletal muscle, factors that influence how muscular a person is — such as their sex and age — were always prominent concerns when it was developed as a biomarker. The first globally used equation — the 1976 Cockcroft–Gault equation, based on data from just 249 adult white men7 — included coefficients for age, weight and sex (the latter based on extrapolation from other work).
But in the 1990s, large US population studies8 showed that African Americans typically have higher creatinine levels than do other Americans. “It’s been replicated in every study that has measured GFR carefully,” Powe says. A desire to account for this led to the introduction of the race coefficient to the eGFR equation2 in 1999. The coefficient is called the MDRD, after the Modification of Diet in Renal Disease study that it emerged from. The MDRD race coefficient was 1.21, meaning that a Black person’s eGFR (and hence kidney function) was estimated to be 21% higher than that of a person from another ethnic group with the same creatinine level. Ten years later, after larger studies, the 2009 CKD-EPI equation was introduced3; this largely superseded the MDRD equation, and lowered the racial coefficient to 1.16.
Some researchers say too little effort has been made to understand the biology of creatinine and its differing levels between US people of African and European backgrounds. “The ball was dropped trying to figure out why there’s that difference,” says task-force member Marva Moxey-Mims, a paediatric nephrologist at the Children’s National Hospital in Washington DC. “People started making up explanations.”
Researchers and physicians often assumed that Black Americans simply had more muscle mass than those in other groups, but the few studies9 that tested this notion did not support it. Powe says that diet and lifestyle play a part, adding: “We still don’t know to this date why creatinine levels are higher.”
The MDRD and 2009 CKD-EPI equations were adopted worldwide, albeit with certain caveats. In Japan, for example, local validation studies introduced a coefficient of roughly 0.8 for people of Japanese descent10.
And, when several European countries imported these US equations, they did so without the race coefficient (the UK being a notable exception). “We did not believe in the race conversion factor because it suggests that Black people are different,” says Ron Gansevoort, a nephrologist at the University of Groningen in the Netherlands. Besides, the eugenic atrocities of the Second World War led nearly all European countries to adopt policies that removed any indication of religion or ethnicity from people’s medical records. “We could not use it,” says Gansevoort, “even if we wanted it.”
Deracializing a biomarker
Around 2016, pressure groups led by US medical students started calling for eGFR equations to be deracialized. Rejecting race as a valid medical category, they proposed to simply eliminate the coefficient from existing equations. By 2020, several US hospitals had done just that, followed by the United Kingdom in 2021.
But Powe and the task force argued that dropping the coefficient risked systematically underestimating Black people’s kidney function, leading to over-diagnosis of kidney disease -and preventing Black individuals from accessing a range of important drugs that require healthy kidneys. Also, Powe says, “by dropping the coefficient, you’re actually dropping all the creatinine values for African Americans and you’re ignoring them. If you do that in all of medicine, you just say, ‘Let’s normalize to the white race’.”
Detecting hidden brain injuries
The task force instead backed CKD-EPI’s revised 2021 equation, which pooled data from Black and non-Black people to derive a single equation that best fitted both groups5. Developing that meant weighting the balance of volunteers to account for the racial disparities in kidney disease. Accordingly, 31.5% of the people in the data set used to develop the 2021 CKD-EPI equation were Black, much higher than the 14% in the US population. But Powe says this higher percentage approximates how many Black people in the United States have kidney failure. “If you’re going to be using this for health equity,” he says, “you should overpopulate it with African Americans.”
This decision has a major consequence. “Based on that mix,” Powe says, “what the equation does is change the estimated GFR not only for African Americans. It changes it for everyone.” For Black individuals, eGFR goes down fractionally. For other people, it rises slightly.
Simulations of the 2021 CKD-EPI equation’s effects predict that more than 400,000 Black Americans would gain a new diagnosis of kidney disease. Ideally, this would lead to better care. However, the equation could also lead to more than five million Americans from other ethnic groups no longer being diagnosed with the disease11.
The United States versus the world
The need to shift the eGFR of everyone who needs a creatinine test has made other countries and regions hesitant about using the 2021 CKD-EPI equation. A committee of nephrologists in Canada voted to implement it. But European groups‚ serving a continental population in which Black people make up only around 2%, decided against. Most European nephrologists are sticking with the 2009 CKD-EPI, without the race modifier.
Some Europeans are critical of the deracialized 2021 equation. “Because you kick out one variable that explains variance — the race variable — it becomes worse for both white and Black people,” says Hans Pottel, a nephrologist at the Catholic University of Leuven (KU Leuven) in Kortrijk, Belgium. “This is a mathematical construction. It has nothing to do with racism.”
In the United Kingdom, an ongoing study that includes various ethnic groups aims to determine which available equation would best serve the country’s population12.
One of those is the European Kidney Function Consortium (EKFC) equation that Pottel has been helping to develop since 2014. It uses the average creatinine levels of various demographic populations — defined by sex, age, geographical location and ethnicity — as a reference, appropriately normalizing tested individuals’ creatinine scores before calculating their eGFR13. The overall equation would be globally applicable but could be adapted to local populations.
This, Pottel says, is not the same as using race as a category. “It has nothing to do with the colour of the skin. It has to do with different populations.” For example, his team has found that creatinine levels vary considerably between populations that would be classified as Black in Europe and the United States compared with those in the Democratic Republic of the Congo and Côte d’Ivoire14.
Elsewhere in Africa, research raises even deeper concerns about kidney function testing. The largest regional study15 of its kind, published in 2022, looked at more than 3,000 people from Malawi, Uganda and South Africa, and found that no available creatinine-based eGFR equation indicated people’s kidney health accurately. Aligning with previous smaller studies, all equations that are currently in use systematically overestimated kidney function in these three countries — and that using the 2009 CKD-EPI equation with its the race coefficient made the overestimation worse. “Creatinine is a lousy biomarker in our setting,” says study leader June Fabian, a nephrologist at the University of the Witwatersrand in Johannesburg, South Africa.
A radiographer performs an investigative kidney ultrasound as part of a regional study in South Africa, Malawi and Uganda.Credit: Sandra Maytham-Bailey, ARK Study
Fabian’s co-author, Robert Kalyesubula, a nephrologist at Makerere University in Kampala, explains that many African populations differ profoundly from those in which creatinine has been validated as a kidney function marker. For example, people from Malawi, Uganda and South Africa typically have less muscle mass, eat less protein and are more often malnourished than are African American populations (who largely have West African ancestry) for whom creatinine levels have been much better characterized. Moreover, the kidney diseases affecting low-income African countries also differ from the late-life, hypertension- and diabetes-related kidney diseases that are dominant in high-income countries. These factors all contribute to creatinine’s inadequacy as a biomarker in the countries that Kalyesubula and Fabian studied.
Because existing equations overestimate kidney function, Fabian says, African countries’ previous adoption of them – mainly the 2009 CKD-EPI equation without the race coefficient — has probably cost lives. “We’ve used them for decades,” she says. “The consequence of that is that we’re missing a lot of people who have renal disease.”
“The American lens in nephrology dominates all the research, a lot of the funding and the narrative,” says Fabian. “In an American nephrologist’s head, an African American represents the rest of Africa. That’s one of the huge biases we’ve been trying to challenge. The genetic diversity in Africa is phenomenal.”
The cystatin alternative
Fabian and Kalyesubula did, however, find that in these three African nations, the alternative biomarker cystatin C provided a better way to measure eGFR15.
Cystatin C is a metabolite that is released into the blood by every cell in the body and filtered out by the kidneys. It has been a recommended diagnostic tool since the early 2000s. With no systematic differences in cystatin C levels being evident between ethnic groups, race modifiers have never been needed for it to provide useful results.
The main barriers to shifting to its more widespread use are cost and availability. Fewer places currently offer cystatin C testing and it is at least three times more expensive to measure than is creatinine. In the United States, this is a matter of roughly US$18 versus $5, which for 250 million annual tests would amount to more than $3 billion in extra health-care costs. In some countries, testing for cystatin C can be ten times as costly as for creatinine.
Although there are technical reasons why cystatin C testing might never be as cheap as creatinine testing, costs might reduce. “Like anything else,” Moxey-Mims says, “the more you use it, the more the price will come down.”
Cystatin C is not unequivocally a better marker overall, however. Gansevoort notes that smoking severely distorts cystatin C results. Obesity, inflammation and thyroid disorders can also have an effect. “Every marker has its advantages and disadvantages,” he says. Generally speaking, clinicians should be mindful that eGFR gives only an estimate of kidney function, Gansevoort notes.
The CKD-EPI group and other researchers have shown that combining creatinine and cystatin C data provides the most accurate estimation of GFR in many contexts5. However, Fabian and Kalyesubula found cystatin C alone to be most accurate.
Potentially, even better blood-borne markers exist — and, as the joint task force recommended, research into this possibility should continue. One option under investigation is to use inexpensive urine tests that can detect kidney damage. But all these techniques still need extensive research and investment to bring them to maturity and enable widespread use.
The measure of a measure
For now, a global consensus on kidney testing remains elusive. In April this year, new guidelines16 issued by the nephrology organization Kidney Disease: Improving Global Outcomes (KDIGO) stated that “use of race in the computation of eGFR should be avoided”.
But KDIGO did not advocate a single preferred equation. Instead, it recommended only that a validated eGFR equation be used, and that this choice should be uniform across geographical regions.
Consequently, there is an apparent impasse. As individual regions confront their unique cultural, historical, financial, demographical and infrastructural challenges, national and regional differences in kidney testing might persist for some time.
For the United States in particular, one key question is whether changing eGFR equation protocols will lead to greater equity in health care. One prominent outcome is the work that is addressing the longer waiting times for kidney transplants that Black Americans have historically experienced.
Because race coefficients inflated African Americans’ eGFR scores, when their kidneys were failing, they reached the threshold for a transplant later than they would have done if the race coefficient had not been used to assess their kidney function. And this probably delayed transplants for many African Americans. In 2022, the Organ Procurement and Transplantation Network (OPTN), the public–private organization that oversees transplant policy in the United States, recommended that African Americans’ eGFR be recalculated without race coefficients, says Martha Pavlakis, a nephrologist at Beth Israel Deaconess Medical Center in Boston, Massachusetts, and vice-chair of the OPTN’s kidney-transplant committee. Then, in 2023, the OPTN acted to adjust the priority of African Americans currently awaiting transplants, whose previously coefficient-inflated eGFR scores had lowered their priority and extended their wait times. Retroactively lowering these eGFR values has cut the transplant waiting times for affected people by an average of two years17, Pavlakis says.
The race-free 2021 CKD-EPI equation no longer requires this adjustment. Yet, currently, there are surprisingly few data with which to assess its affect.
Sherri Rose, who studies medical algorithms at Stanford University in California, explains that diagnostic equations occupy a curious place in medicine. Unlike treatments and the biochemical tests underpinning diagnostics, equations themselves don’t require regulatory approval. This means trials of an equation to determine its effect on clinical outcomes are not required before its clinical use. Rose led the only study18 so far on the effects of the 2021 CKD-EPI equation. It examined the health records of more than 500,000 people whose kidney function had been tested in a health-care system, Stanford Health Care, for three years before and two years after the equation was introduced. The main question was whether the new equation had benefited Black people by getting them more referrals to see nephrologists.
The answer was that it had not.
That is not a definitive finding, of course. Rose says the result concerns just one health-care system, which might not represent US health care in general. She urges other centres to run studies and to look at other health outcomes, and cautions that it might take five to ten years to see the equations having an effect on outcomes.
But for now, her study raises a cautionary flag about whether the change in formula alone is sufficient to achieve greater health equity. “A change of formula is a big headline,” she says. “It’s a quick ‘win’. But it doesn’t necessarily solve the problem.”
Members of a group including the Zlatý kůň woman and the Ranis individuals travel across Europe some 45,000 years ago (illustration). Credit: Tom Björklund
The oldest human genomes ever sequenced are helping to illuminate some extremely ancient baby-making.
The Neanderthal DNA found in all people with ancestors outside Africa entered the family tree much more recently than previously thought, according to two analyses that together examine DNA from people who lived across Eurasia over the past 45,000 years. One study1 finds that modern humans swapped genes with our sister species in a roughly 7,000-year period starting around 50,500 years ago; the other2 finds that the mixing took place between 45,000 and 49,000 years ago.
The data also suggest that some genetic variants from Neanderthals were helpful to modern humans encountering new climates and diseases outside of Africa. The findings are published today by separate teams, in papers in Science1 and Nature2.
That both papers reinforce the idea that the ancestors of all people outside Africa got their Neanderthal ancestry in a single swoop is “striking”, says Alexander Platt, a geneticist at the University of Pennsylvania in Philadelphia, who was not involved with either study. “It’s eye-opening”, he says, that this model of human evolution is correct.
Dating details
Neanderthals and modern humans shared the planet for thousands of years. Whether our two species mingled was hotly debated for decades — until research revealed that Neanderthal DNA makes up a small percentage of the genomes of all humans currently living, other than people whose ancestry comes solely from sub-Saharan Africa.
Since then, the details of the human–Neanderthal meet cute have remained “one of the main questions” in human evolutionary biology, says Benjamin Peter, a population geneticist at the Max Plank Institute for Evolutionary Anthropology in Leipzig, Germany, and a co-author of the Science study.
Neanderthals, who lived in what’s now Europe and western Asia, and modern humans, who evolved in Africa, probably met and mingled throughout our shared time on Earth. Previous research estimated that any gene flow between them did not leave a mark until more recently ― as early as 65,000 years ago.
Koněprusy cave at the Zlatý kůň site in the Czech Republic, where blasting in 1950 led to the discovery of the remains of a woman who lived some 45,000 years ago.Credit: Martin Frouz
The authors of the Nature paper reassessed the timing of that interbreeding by examining the DNA of a male Homo sapiens found near Ranis, Germany, and that of a female Homo sapiens whose remains were discovered in a cave at a site called Zlatý kůň in the Czech Republic. The researchers’ analysis showed that both people lived roughly 45,000 years ago, making them the oldest Homo sapiens genomes ever sequenced.
Relatively recent mixing
The team then sought to understand the history of the Neanderthal DNA embedded in these two individuals’ genomes. The researchers found that it came from a single wave of Homo sapiens and Neanderthal baby-making between 45,000 and 49,000 years ago, almost certainly in the Middle East, the scientists said at a press briefing. The authors found no evidence that the ancestors of the Zlatý kůň woman, the Ranis man and other people found at Ranis intermingled with Neanderthals in Europe after that event.
Oldest stone tools in Europe hint at ancient humans’ route there
The date range is much later than previous estimates, says Pontus Skoglund, an evolutionary geneticist at the Francis Crick Institute in London. But it wasn’t the last surprise. DNA showed that the Zlatý kůň woman and the Ranis people were all part of the same extended family, even though their remains were found 230 kilometres apart.
Concealing some of the information on job applications led to more women being hired.Credit: Christopher Ames/Getty
In 2017, when Sherri Christian returned to her institution after a year-long sabbatical, she looked around the biochemistry department and realized that she was the last female hire, seven years earlier. At the time, there were 19 members, just 6 of them women, including her.
During her sabbatical, Christian attended a talk about diversity and inclusion at a Canadian Society for Immunology meeting at the University of British Columbia in Vancouver, Canada. Inspired by what she learnt, Christian and her colleagues set about making hiring diversity a priority.
By this year, her department at the Memorial University of Newfoundland Faculty of Medicine in St John’s, Canada, had managed to achieve gender parity. The changes made to hiring processes are described in a preprint posted to the bioRxiv server last month1. It has not been peer reviewed.
Christian’s department is not alone in taking action to boost gender diversity among their staff. In 2022, leaders of several departments at the University of Melbourne, Australia, reported the details of affirmative-action recruitment initiatives that led to more female hires.
And this year, the Eindhoven University of Technology in the Netherlands revealed the results of a five-year policy stating that only female applicants would be considered for permanent academic roles during the first six months of recruitment. The controversial policy led to 50% of all new hires being women, up from 30% previously.
Loneliness
When the Newfoundland project started in 2020, Christian was the only woman to have been hired in ten years. “It was a bit lonely,” she says. “You’d look around and there’d be no women on the committee you are sitting in, or it would be the same other person over and over again because there are only so many people to choose from.”
Between 2020 and 2024, the department’s job postings emphasized the equity, diversity and inclusion aspects of the application process for entry-level tenure-track faculty positions.
But the main change was anonymizing job applications in an attempt to stamp out implicit bias on search committees.
Committee members were given copies of application documents in which candidates’ names and contact information were redacted, as were references to their institution, country and leaves of absence. Gender, religion, ethnicity, race, age and nationality were also removed. This task was done by the head of the department, Mark Berry, who was not involved in evaluating candidates. His work took, on average, 90 minutes per application.
The degree type and year of completion remained, as did the location and title of any national or international conference presentations. Publication titles, including the year of publication and journal, also remained. Berry also added candidates’ authorship position in the publications and presentations.
The redacted versions were then used to draw up a shortlist of around ten candidates for each of the five roles being filled during the study period.
At that point, the full, unredacted applications, as well as reference letters, were supplied to the search committee, enabling members to check that no candidate had been unfairly disadvantaged by any redactions.
One member, for example, said the unredacted version enabled them to see the full extent of one candidate’s outreach activity, which had been redacted because much of it was focused on women in science.
Three or four candidates were then invited to interview. The number of group and one-to-one meetings over the typically two-day process was reduced to decrease applicants’ stress and fatigue. Interviewees were invited to meet with a realtor to discuss housing and living costs.
Biased
The authors found the redactions led to a “substantial difference” in the number of female candidates offered positions. They compared the genders of candidates interviewed and hired for five jobs between 2010 and 2020, and between 2021 and 2024. All five went to women during the study, compared with just one during the earlier period. The move achieved gender parity in the department.
Berry says that the search committee’s members responded positively to the redacted documentation, which enabled them to focus on the application. “They weren’t constantly having to tell themselves not to be biased, they could just relax and turn the brain off and focus on the important stuff,” he adds.
After a months-long climb up the side of a crater on Mars, NASA’s Perseverance rover has finally emerged on its rim — and now faces a 4-billion-year-old landscape never before explored on the red planet.
Flying Mars rocks to Earth could cost an astronomical $11 billion
“These are amongst the oldest rocks in the Solar System,” says Kenneth Farley, a geochemist at the California Institute of Technology in Pasadena and the mission’s project scientist. He spoke on 12 December at a meeting of the American Geophysical Union in Washington DC.
Researchers hope that the rocks outside of Jezero Crater hold signs of whether Mars might have once sustained extraterrestrial life, when it was warmer and wetter than today. The rover landed in Jezero nearly four years ago and has been exploring the crater’s floor and a fossilized river delta for such signs ever since. Over the course of its 32-kilometre journey, it has drilled rock samples and stored 15 of them in its belly; there are 11 empty tubes remaining that could be filled with additional intriguing rocks from the fresh Martian terrain it now faces.
Perseverance has already placed 10 tubes on the crater floor in a ‘sample depot’ where a future mission could pick them up. NASA is trying to figure out how to bring any of the samples back to Earth for analysis — the only way that researchers can study them thoroughly to confirm signs of life. The original plan for bringing them back was estimated to cost up to US$11 billion, and the agency’s budget won’t support such a mission.
Epic trek
Meanwhile, Perseverance trundles along. Reaching the crater rim on 11 December meant that the rover climbed more than 500 metres in elevation — by far its steepest climb since it landed in February 2021. The crater’s edge is a geologically interesting region because Jezero was once filled with an ancient lake, making the rim a shoreline at one time.
As the Perseverance rover climbed Jezero Crater, it took images and strung them together in a panorama to illustrate the steepness of the terrain it was travelling up to the crater rim.
The first spot it will visit outside Jezero is a 450-metre-high stack of rocks dubbed Witch Hazel Hill by researchers. The rover should reach this site next week. Its layers might hold clues to the area’s geological history, says Candice Bedford, a geochemist at Purdue University in West Lafayette, Indiana. From there, Perseverance will explore rock ridges that could represent an ancient hydrothermal system, where hot water oozed around rocks fractured when a big meteorite hit Mars.
The region might have hosted life at some point, or been conducive to it. It will take some time for researchers to interpret the new rocks and whether they might be promising for signs of life, however, because they are so different than those inside Jezero, Farley says.
Commonality outlines a roadmap to rapid analysis. Credit: Nature (2024). DOI: 10.1038/s41586-024-08211-4
The development of molecules to study and treat disease is becoming increasingly burdened by the time and specificity required to analyze the vast amounts of data generated by synthesizing large collections of new molecules. Scientists at St. Jude Children’s Research Hospital present a novel solution to this problem, using the fundamental fragmentation patterns of chemical building blocks to barcode reactions from starting materials to products.
In doing so, they have removed a key bottleneck in the process of synthesizing and screening small molecules. Their work is published in Nature.
Current analytical methods lag the scale of rapid, high-throughput analysis desired by researchers. Scientists at St. Jude, led by Daniel Blair, Ph.D., St. Jude Department of Chemical Biology and Therapeutics, set about solving this problem by capitalizing on a general feature residing in most chemical reactions.
“Generality is essential for doing anything quickly. So, we sought to identify general features which would uniformly encode the analysis of small molecules,” explained Blair, corresponding author of the article.
“We discovered that the building blocks we use to create small molecules break apart in specific, predictable ways and that these patterns can then be used as universal barcodes to analyze chemical products.”
A fragmentation-first approach to experimental design
Fragmentation is a fundamental property of chemical matter, but this novel application in the realm of chemical synthesis is giving it new meaning. A general rate for analyzing a chemical reaction’s outcome is conventionally around 3 minutes, but as researchers scale up, analyzing additional reactions with more variables, that amount of time becomes impractical.
This work by Blair and the team transforms chemical reaction analysis from a slow, highly customized and specialist-driven method to a streamlined approach driven by simple-to-identify fragmentation barcodes and a single analytical readout.
“Because these fragmentation patterns are a fundamental property of chemical matter, they are reliably transposable from starting materials to products. As soon as you recognize that starting materials can define the analysis of the resulting chemical products, you’ve generalized the entire approach,” said first author Maowei Hu, Ph.D., St. Jude Department of Chemical Biology and Therapeutics.
This fragmentation-first approach to high-throughput experimental design can be applied in many ways because this fundamental property is not disease- or discipline-specific. Future applications may include the development of antibiotics, antifungals, cancer therapeutics, molecular glues and many more types of molecules.
“We’ve not only transformed the speed of chemical reaction analysis but also paved the way for directly utilizing these molecules to understand and combat diseases,” said Blair.
“This advance represents a significant milestone in our mission to develop effective therapies swiftly and efficiently. We’ve transformed chemical reaction analysis from minutes to milliseconds, and in doing so, have shifted the bottleneck from making molecules to finding functions.”
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Universal barcodes unlock fast-paced small molecule synthesis (2024, December 11)
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This schematic overview diagram shows the components that make up the rectangular squareimine (violet-blue). The squareimines align in the solid body (centre) in such a way that the cavities connect to create a network of pores (green). Right: the resultant sponge-like material. Credit: HHU/Tobias Pausch
How can aromatic compounds be separated from aliphatic compounds efficiently without having to rely on energy-intensive processes? In an article published in the journal Angewandte Chemie International Edition, chemists from Heinrich Heine University Düsseldorf (HHU) present an innovative molecular sieve made of partially fluorinated macrocycles that can separate these compounds selectively.
Aromatic compounds—substances with flat, ring-shaped structures made up of carbon atoms—play an important role in organic chemistry. Among other things, they serve as solvents or feedstock for many plastics and are also used in fuels. One well-known example is benzene (C6H6).
Its aliphatic counterparts, such as cyclohexane (C6H12), are also ring-shaped. However, by contrast with aromatics, they are flexible and thus form a zigzag-like, three-dimensional structure.
Separating aromatics from other organic compounds—in particular aliphatic hydrocarbons—is a major challenge, yet often necessary. For example, cyclohexane is produced by hydrogenation of benzene, resulting in a mixture of both substances.
Separation processes used to date require a significant amount of energy, as the physical properties of the compounds, such as boiling points and vapor pressure, are virtually identical.
The research team headed by HHU chemist Dr. Bernd M. Schmidt (Functional Supramolecular Systems Research Group) and the research group headed by Professor Dr. Christoph Janiak (Chair for Nanoporous and Nanoscale Materials) have together developed a supramolecular sorting machine, which can realize the separation in a different way. It comprises electron-deficient, fluorinated macrocycles with a rectangular structure called squareimines, which predominantly adsorb aromatic molecules.
Schmidt says, “In the squareimines, small, three-dimensional molecules accumulate in the solid body in such a way that the connection of the cavities creates a network of pores.” This ultimately results in a network of many tubes arranged in parallel next to each other, each of which has a diameter of less than one nanometer. “This porous structure, acting as a ‘supramolecular sponge,’ can trap small molecules such as gases or volatile organic compounds,” Schmidt continues.
Three-dimensional structure of the pore network and position of the aromatic benzene rings (blue) in the crystal, rejection of cyclohexene (orange) and cyclohexane (gray). Credit: HHU/Tobias Pausch
The researchers optimized the adsorption capability of their material through the targeted, controlled linking of the structures. Tobias Pausch, Ph.D. student in the research group headed by Dr. Schmidt and lead author of the study, states, “The squareimine NDI2F42 has a strong affinity for aromatic compounds such as benzene and toluene, while ignoring their aliphatic counterparts.”
The chemists are already measuring high selectivities of up to 97:3 for benzene over cyclohexane and 93:7 for toluene over methylcyclohexane in initial tests. “This means that almost exclusively aromatic compounds are adsorbed into the crystalline, supramolecular sponge, while the aliphatic compounds are left behind,” says Pausch.
Schmidt claims, “The identified squareimines offer great potential for molecular separation. This is due not only to their favorable structure, but also to their diversity, making it possible to produce tailored sorters for highly specific compounds. They are also easy to produce, making them a promising platform for new, innovative and lightweight adsorber materials.”
More information:
Tobias Pausch et al, Fluorinated Squareimines for Molecular Sieving of Aromatic over Aliphatic Compounds, Angewandte Chemie International Edition (2024). DOI: 10.1002/anie.202418877
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Supramolecular sorting machine separates aromatic and aliphatic compounds (2024, December 11)
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The discovery of CA-KR1, a highly thermo- and alkali-stable carbonic anhydrase, signifies a leap forward toward the facilitation of biomimetic HPC carbon sequestration and industrial decarbonization. Credit: 2024 Konstantinos Rigkos. Licensed under CC BY 4.0
Microbial organisms adapted to extreme and inhospitable environments carry proteins within their proteome that significantly accelerate the dissolution of CO₂ in water, while also withstanding very high temperatures and pH. These enzymes are valuable promoters of CO₂ capturing from industrial exhaust streams. Researchers at the Biomedical Sciences Research Center Alexander Fleming (BSRC Fleming) in Vari, Greece, have identified such a bioactive molecule.
Microorganisms producing resilient proteins and enzymes have evolved to thrive in extreme conditions, such as hot springs, salt lakes, and volcanoes. A team of Greek researchers, led by Dr. Georgios Skretas at BSRC Fleming developed new metagenomic analysis tools to identify a super heat-resistant enzyme of biotechnological interest.
After scanning millions of genes from open-access metagenomic databases, a new promising candidate biocatalyst was found in a metagenomic sample originally collected from a hot spring in the Kirishima region of Japan. Through this process, the scientists from the Skretas Lab discovered the highly stable carbonic anhydrase CA-KR1. This robust enzyme specializes in enhancing the dissolution of CO₂ in water and exhibits unprecedented stability under industrial conditions.
“Metagenomic analysis gives us access to a ‘pool of proteins’ that remains largely unexplored and can unravel enzymes and other proteins of great biotechnological interest, such as the CA-KR1 enzyme we have discovered,” comments Dr. Skretas. According to Dr. Skretas, the CA-KR1 enzyme is extremely stable at very high temperatures and in strong alkaline solutions, which is extremely rare for proteins.
“More specifically, the enzyme performs exceptionally well under conditions of Hot Potassium Carbonate (HPC) capture technologies, with temperatures exceeding 80 °C and pH levels above 11. It enhances CO₂ capture productivity by 90% at 90 °C compared to standard non-enzymatic methods. It also allows for 90% CO₂ removal at 80 °C, surpassing the performance of standard HPC capture and doubling the initial CO₂ absorption rate at 90 °C,” explains Ph.D. candidate Konstantinos Rigkos, who, along with the Post-Doctoral Researcher Dimitra Zarafeta, played a central role in this study, recently published in Environmental Science & Technology.
“The CA-KR1 enzyme is perhaps the most robust biocatalyst (carbonic anhydrase) for efficient CO₂ capture in HPC conditions reported to date. Its integration in industrial settings holds great promise for accelerating the industrial implementation of biomimetic CO₂ capture—a green, sustainable technology expected to be a ‘game changer’ in carbon sequestration, significantly contributing to the timely achievement of carbon neutrality,” added Dr. Zarafeta.
The innovative enzyme CA-KR1 is already patent-pending. Its transition from the laboratory bench to the industrial bioreactor will be an important step toward industrial decarbonization, significantly contributing to innovation in the critical area of CO₂ capture for the well-being of the planet. These studies are currently underway.
More information:
Konstantinos Rigkos et al, Biomimetic CO2 Capture Unlocked through Enzyme Mining: Discovery of a Highly Thermo- and Alkali-Stable Carbonic Anhydrase, Environmental Science & Technology (2024). DOI: 10.1021/acs.est.4c04291
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Super-enzyme can enhance CO₂ capture in extreme conditions (2024, December 11)
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a) Bright field (BF)-low magnification TEM image and b) BF-high resolution TEM (HRTEM) image for MgAlTi/M 10%. c) BF-HRTEM image of the area framed by the white box in (b), and corresponding FT pattern. Credit: Advanced Sustainable Systems (2024). DOI: 10.1002/adsu.202400496
Nitrogen oxides (NOx) are a group of gases formed by nitric oxide and nitrogen dioxide. They are produced, above all, by the burning of fossil fuels. Due to their harmful effects on human health and the environment, in recent years they have been in the scientific community’s crosshairs.
A research team at the Chemical Institute for Energy and the Environment (IQUEMA), attached to the University of Cordoba, has developed a photocatalytic material capable of effectively reducing these gases, achieving results similar to others developed to date, but through a more economical and sustainable process. The findings are published in the journal Advanced Sustainable Systems.
There are chemical reactions that can be favored or accelerated in the presence of light. In the case of nitrogen oxides, light energy, in the presence of a material that functions as a catalyst, makes it possible to oxidize the nitrogen oxides in the atmosphere and convert them into nitrates and nitrites.
The first author of this research paper, Laura Marín, explained that, unlike other photocatalytic reactions, which only operate under ultraviolet light, this new material boasts the advantage of working effectively with visible light, which is much more abundant and makes up most of the solar spectrum, allowing greater use to be made of the sun’s energy.
To do this, the research team has synthesized a new compound by combining two different types of materials: carbon nitride (which allows the reaction to be activated in the presence of visible light) and lamellar double hydroxides, which have the capacity to catalyze the reaction, in addition to featuring economical and easily scalable production.
Professor Ivana Pavlovic, one of the researchers who participated in the study, explained that the new process is capable of converting 65% of nitrogen oxides under visible light irradiation, a percentage very similar to that achieved by other photocatalysts, but with the advantage that this new system uses minerals such as magnesium and aluminum, which are “cheaper, abundant in nature, and benign, compared to other photocatalysts used to date, which contain cadmium, lead or graphene,” the researcher pointed out.
Professor of Inorganic Chemistry and IQUEMA Director Luis Sánchez explained that, in this way, the work represents an important step towards the large-scale development of a system that makes it possible to decontaminate the air under real-world conditions, thus reducing one of the most common pollutant gases in cities, and one whose long-term effects can cause serious health problems.
More information:
Laura Marín et al, The Efficient Coupling between MgAlTi Layered Double Hydroxides and Graphitic Carbon Nitride Boosts Vis Light‐Assisted Photocatalytic NOx Removal, Advanced Sustainable Systems (2024). DOI: 10.1002/adsu.202400496
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University of Córdoba
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A new, more economical and sustainable material design uses sunlight to decontaminate air (2024, December 11)
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Christian Solem in the laboratory at DTU National Food Institute. Credit: Lene Hundborg Koss
Currently, most vitamins are produced in factories, either synthetically or with the help of microorganisms that are not approved for food use. These production methods require extensive and often complex purification processes (to separate the vitamin from non-food-approved materials), which are costly and energy-intensive.
Now, a team of researchers from the Technical University of Denmark (DTU) has successfully produced vitamin B2, also known as riboflavin, in significant quantities using a novel, cost-effective, and climate-friendly method.
The researchers employed a food-approved lactic acid bacterium, demonstrating that it can produce vitamin B2 when subjected to heat. The study is published in the Journal of Agricultural and Food Chemistry.
“I think it’s beautiful that something as simple as gentle heating and lactic acid bacteria can be used to produce vitamin B2. The method allows for food to be fortified with vitamin B2 in an easy way, for example, during the production of yogurt or sourdough,” says Associate Professor Christian Solem from DTU National Food Institute, who led the research.
Vitamin B2 is essential for energy production and for maintaining a normal immune function. It also plays an important role in iron absorption, and deficiency has wide-ranging effects.
Fortification with B2 as part of food preparation
This innovative method integrates vitamin production into the food fermentation process. Vitamins can thus be produced and added locally. By using riboflavin-producing bacteria in food production, manufacturers can improve the nutritional value of traditional foods economically, enhancing public health while reducing environmental impact.
The method differs from existing technologies by being natural—without genetic modification—and consuming less energy and fewer chemicals compared to traditional synthetic vitamin production. Fortification only requires basic fermentation tools, which are already common in many households.
How the researchers stressed the bacteria
The team subjected lactic acid bacteria to “oxidative stress,” a natural pressure that compels bacteria to produce more riboflavin to protect themselves.
“We used the microorganism Lactococcus lactis, commonly known from cheese and cultured milk, to produce vitamin B2. Lactococcus thrives best at around 30°C, but we heated the bacteria to 38–39°C, which they didn’t like. Bacteria adapt to new conditions, and to defend themselves against the oxidative stress caused by the heat, they started producing vitamin B2,” explains Solem.
The researchers optimized the vitamin production process by adding various nutrients, achieving a production of 65 milligrams of vitamin B2 per liter of fermented substrate—nearly 60 times the daily human requirement for the vitamin.
Cultural compatibility and future potential
“It would be ideal to package these B2-producing lactic acid bacteria as a starter culture that can be added to foods like milk, maize, or cassava for fermentation. When these foods are fermented using the starter culture, which includes specially selected lactic acid bacteria along with traditional ones, they automatically produce riboflavin while maintaining the traditional flavor and texture of the food,” says Christian Solem.
Many developing countries already have strong traditions of fermenting foods, which extends shelf life and reduces waste.
The method could potentially be expanded to produce other essential vitamins and nutrients, such as folic acid (B9) and vitamin B12, which are often lacking in plant-based diets. It could also be applied to various food types, including sauerkraut.
More information:
Emmelie Joe Freudenberg Rasmussen et al, Harnessing Oxidative Stress to Obtain Natural Riboflavin Secreting Lactic Acid Bacteria for Use in Biofortification, Journal of Agricultural and Food Chemistry (2024). DOI: 10.1021/acs.jafc.4c08881
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Technical University of Denmark
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Simple, eco-friendly technique uses bacteria to produce vitamin B2 naturally (2024, December 11)
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